LOCUS BC007343 1282 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens synovial sarcoma, X breakpoint 2, mRNA (cDNA clone
MGC:15364 IMAGE:3615133), complete cds.
ACCESSION BC007343
VERSION BC007343.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1282)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1282)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC007343.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 24 Row: g Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 28559016.
FEATURES Location/Qualifiers
source 1..1282
/db_xref="H-InvDB:HIT000033160"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15364 IMAGE:3615133"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1282
/gene="SSX2"
/gene_synonym="HD21"
/gene_synonym="HOM-MEL-40"
/gene_synonym="MGC15364"
/gene_synonym="MGC3884"
/db_xref="GeneID:6757"
/db_xref="HGNC:HGNC:11336"
/db_xref="MIM:300192"
CDS 71..637
/gene="SSX2"
/gene_synonym="HD21"
/gene_synonym="HOM-MEL-40"
/gene_synonym="MGC15364"
/gene_synonym="MGC3884"
/codon_start=1
/product="synovial sarcoma, X breakpoint 2"
/protein_id="AAH07343.1"
/db_xref="GeneID:6757"
/db_xref="HGNC:HGNC:11336"
/db_xref="MIM:300192"
/translation="MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASE
KIFYVYMKRKYEAMTKLGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFG
RLQGISPKIMPKKPAEEGNDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRG
EHAWTHRLPERKQLVIYEEISDPEEDDE"
BASE COUNT 386 a 318 c 278 g 300 t
ORIGIN
1 ctcagagtac gcacggtctg attttctctt tggattcttc caaaatcaga gtcagactgc
61 tcccggtgcc atgaacggag acgacgcctt tgcaaggaga cccacggttg gtgctcaaat
121 accagagaag atccaaaagg ccttcgatga tattgccaaa tacttctcta aggaagagtg
181 ggaaaagatg aaagcctcag agaaaatctt ctatgtgtat atgaagagaa agtatgaggc
241 tatgactaaa ctaggtttca aggccaccct cccacctttc atgtgtaata aacgggccga
301 agacttccag gggaatgatt tggataatga ccctaaccgt gggaatcagg ttgaacgtcc
361 tcagatgact ttcggcaggc tccagggaat ctccccgaag atcatgccca agaagccagc
421 agaggaagga aatgattcgg aggaagtgcc agaagcatct ggcccacaaa atgatgggaa
481 agagctgtgc cccccgggaa aaccaactac ctctgagaag attcacgaga gatctggacc
541 caaaaggggg gaacatgcct ggacccacag actgcctgag agaaaacagc tggtgattta
601 tgaagagatc agcgaccctg aggaagatga cgagtaactc ccctcaggga tacgacacat
661 gcccatgatg agaagcagaa cgtggtgacc tttcacgaac atgggcatgg ctgcggaccc
721 ctcgtcatca ggtgcatagc aagtgaaagc aagtgttcac aacagtgaaa agttgagcgt
781 catttttctt agtgtgccaa gagttcgatg ttagcgttta cgttgtattt tcttacactg
841 tgtcattctg ttagatacta acattttcat tgatgagcaa gacatactta atgcatattt
901 tggtttgtgt atccatgcac ctaccttaga aaacaagtat tgtcggttac ctctgcatgg
961 aacagcatta ccctcctctc tccccagatg tgactactga gggcagttct gagtgtttaa
1021 tttcagattt tttcctctgc atttacacac acacgcacac aaaccacacc acacacacac
1081 acacacacac acacacacac acacacacac caagtaccag tataagcatc tgccatctgc
1141 ttttcccatt gccatgcgtc ctggtcaagc tcccctcact ctgtttcctg gtcagcatgt
1201 actcccctca tccgattccc ctgtagcagt cactgacagt taataaacct ttgcaaacgt
1261 tcaaaaaaaa aaaaaaaaaa aa
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