LOCUS BC007300 2559 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens SNHG3-RCC1 readthrough transcript, mRNA (cDNA clone
MGC:15698 IMAGE:3351770), complete cds.
ACCESSION BC007300
VERSION BC007300.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2559)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2559)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 22 Row: o Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20149512.
FEATURES Location/Qualifiers
source 1..2559
/db_xref="H-InvDB:HIT000033130"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15698 IMAGE:3351770"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2559
/gene="SNHG3-RCC1"
/db_xref="GeneID:751867"
/db_xref="HGNC:HGNC:33536"
CDS 287..1552
/gene="SNHG3-RCC1"
/codon_start=1
/product="SNHG3-RCC1 readthrough transcript"
/protein_id="AAH07300.1"
/db_xref="GeneID:751867"
/db_xref="HGNC:HGNC:33536"
/translation="MSPKRIAKRRSPPADAIPKSKKVKVSHRSHSTEPGLVLTLGQGD
VGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRD
TSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMK
KSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQ
GLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPG
TESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEE
KSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMM
GKQLENRVVLSVSSGGQHTVLLVKDKEQS"
BASE COUNT 659 a 598 c 734 g 568 t
ORIGIN
1 agattcgcag tggtcgcttc ttctccttgg atttgttaag gattccaagt aactcttatt
61 tggagagaag acgatctgca cttcgcattt tggcattgac atttaatttt agggtccttt
121 atatagaagg gagactacat gaatgtgtaa gatcttggag gaagacagca gagagagaga
181 gagagagcag agatcccagg gttaaaagtt ggagaaattt cacagtacat catccaaaag
241 aggagtccat gatggaggca gaggtaaact tggagaggac aggaagatgt cacccaagcg
301 catagctaaa agaaggtccc ccccagcaga tgccatcccc aaaagcaaga aggtgaaggt
361 ctcacacagg tcccacagca cagaacccgg cttggtgctg acactaggcc agggcgacgt
421 gggccagctg gggctgggtg agaatgtgat ggagaggaag aagccggccc tggtatccat
481 tccggaggat gttgtgcagg ctgaggctgg gggcatgcac accgtgtgtc taagcaaaag
541 tggccaggtc tattccttcg gctgcaatga tgagggtgcc ctgggaaggg acacatcagt
601 ggagggctcg gagatggtcc ctgggaaagt ggagctgcaa gagaaggtgg tacaggtgtc
661 agcaggagac agtcacacag cagccctcac cgatgatggc cgtgtcttcc tctggggctc
721 cttccgggac aataacggtg tgattggact gttggagccc atgaagaaga gcatggtgcc
781 tgtgcaggtg cagctggatg tgcctgtggt aaaggtggcc tcaggaaacg accacttggt
841 gatgctgaca gctgatggtg acctctacac cttgggctgc ggggaacagg gccagctagg
901 ccgtgtgcct gagttatttg ccaaccgtgg tggccggcaa ggcctcgaac gactcctggt
961 ccccaagtgt gtgatgctga aatccagggg aagccggggc cacgtgagat tccaggatgc
1021 cttttgtggt gcctatttca cctttgccat ctcccatgag ggccacgtgt acggcttcgg
1081 cctctccaac taccatcagc ttggaactcc gggcacagaa tcttgcttca taccccagaa
1141 cctaacatcc ttcaagaatt ccaccaagtc ctgggtgggc ttctctggtg gccagcacca
1201 tacagtctgc atggattcgg aaggaaaagc atacagcctg ggccgggctg agtatgggcg
1261 gctgggcctt ggagagggtg ctgaggagaa gagcataccc accctcatct ccaggctgcc
1321 tgctgtctcc tcggtggctt gtggggcctc tgtggggtat gctgtgacca aggatggtcg
1381 tgttttcgcc tggggcatgg gcaccaacta ccagctgggc acagggcagg atgaggacgc
1441 ctggagccct gtggagatga tgggcaaaca gctggagaac cgtgtggtct tatctgtgtc
1501 cagcgggggc cagcatacag tcttattagt caaggacaaa gaacagagct gatgaagcct
1561 ctgagggcct ggcttctgtc ctgcacaacc tccctcacag aacagggaag cagtgacagc
1621 tgcagatggc agcgggcctc tccccagccc tgagcactgt gtcagttcct gccttttctc
1681 atcagcagaa cagaatcctt ttcctctttt ccttcctcct ctttggaatt ttcctgggac
1741 ctacagaata aaggggggga tggacagggg gttttcaaaa ggaacatggc tcactcagag
1801 ctatatggtt agacgtttct ccccttttcc ctaccttcca tggtcctggt tggccctggc
1861 tttgcctact agaaaaccaa aacttccccc ctggggtttt gtgcccactc tctgagaagt
1921 tggggctcca tcaagcccca ttctagtcat gtgccccttt cctgtcccta acagtccaca
1981 ggcaaacaaa tggtacagtc ataagagcca tctgtcacgg acccacgccc agaggaacgt
2041 gcagaaaaaa gcagagctac atggctgtgg gcaactataa gccaaatatt tggctcagaa
2101 caggtgtcca tgggacaaaa aagaacgatc ctccacttga ccaagaaaaa agtgattctc
2161 ccagaagcac aaagcatact cttgcccctc aggtgttgct tgtgtacatc gtacccatcc
2221 attcggcttc acctgcagcc aacggcctgg aatcgcaaag agacaccact ctgggcagag
2281 cagagcaggg tatggggtgg ggagagaggg tggagggttt tataaacaaa cttaacagca
2341 atattgaaag gaggtggggg attgagggag ggacagagtg ttggagggcc agagactagt
2401 cctgagatgg aaacagcaac ttgtacagtg gctgagaaaa taggatatag ttttgatttt
2461 tttaattgta aaatattttg gagggagaac aaaatctttt aacattttga ataaatttag
2521 agttttataa aatagaaaaa aaaaaaaaaa aaaaaaaaa
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