LOCUS BC007275 2731 bp mRNA linear HUM 20-DEC-2004
DEFINITION Homo sapiens nicalin homolog (zebrafish), mRNA (cDNA clone
IMAGE:3161516), partial cds.
ACCESSION BC007275
VERSION BC007275.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2731)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2731)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 22 Row: i Column: 20.
FEATURES Location/Qualifiers
source 1..2731
/db_xref="H-InvDB:HIT000086780"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3161516"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2731
/gene="NCLN"
/db_xref="GeneID:56926"
CDS <1..822
/gene="NCLN"
/codon_start=1
/product="NCLN protein"
/protein_id="AAH07275.1"
/db_xref="GeneID:56926"
/translation="DNLDHTDSSLLQDNVAFVLCLDTVGRGSSLHLHVSKPPREGTLQ
HAFLRELETVAAHQFPEVRFSMVHKRINLAEDVLAWEHERFAIRRLPAFTLSHLESHR
DGQRSSIMDVRSRVDSKTLTRNTRIIAEALTRVIYNLTEKGTPPDMPVFTEQMQIQQE
QLDSVMDWLTNQPRAAQLVDKDSTFLSTLEHHLSRYLKDVKQHHVKADKRDPEFVFYD
QLKQVMNAYRVKPAVFDLLLAVGIAAYLGMAYVAVQHFSLLYKTVQRLLVKAKTQ"
BASE COUNT 473 a 900 c 836 g 522 t
ORIGIN
1 gacaacctgg accacacaga ctccagcctg cttcaggaca atgtggcctt cgtgctgtgc
61 ctggacaccg tgggccgggg cagcagcctg cacctgcacg tgtccaagcc gcctcgggag
121 ggcaccctgc agcacgcctt cctgcgggag ctggagacgg tggccgcgca ccagttccct
181 gaggtacggt tctccatggt gcacaagcgg atcaacctgg cggaggacgt gctggcctgg
241 gagcacgagc gcttcgccat ccgccgactg cccgccttca cgctgtccca cctggagagc
301 caccgtgacg gccagcgcag cagcatcatg gacgtgcggt cccgggtgga ttctaagacc
361 ctgacccgta acacgaggat cattgcagag gccctgactc gagtcatcta caacctgaca
421 gagaagggga cacccccaga catgccggtg ttcacagagc agatgcagat ccagcaggag
481 cagctggact cggtgatgga ctggctcacc aaccagccgc gggccgcgca gctggtggac
541 aaggacagca ccttcctcag cacgctggag caccacctga gccgctacct gaaggacgtg
601 aagcagcacc acgtcaaggc tgacaagcgg gacccagagt ttgtcttcta cgaccagctg
661 aagcaagtga tgaatgcgta cagagtcaag ccggccgtct ttgacctgct cctggctgtt
721 ggcattgctg cctacctcgg catggcctac gtggctgtcc agcacttcag cctcctctac
781 aagaccgtcc agaggctgct cgtgaaggcc aagacacagt gacacagcca cccccacagc
841 cggagccccc gccgctccac agtccctggg gccgagcacg agtgagtgga cactgccccg
901 ccgcgggcgg ccctgcaggg acaggggccc tctccctccc cggcggtggt tggaacactg
961 aattacagag cttttttctg ttgctctccg agactggggg gggattgttt cttcttttcc
1021 ttgtctttga acttccttgg aggagagctt gggagacgtc ccggggccag gctacggact
1081 tgcggacgag ccccccagtc ctgggagccg gccgccctcg gtctggtgta agcacacatg
1141 cacgattaaa gaggagacgc cgggaccccc tgcccgatcg cgcgcggcct ccgcccaccg
1201 cctcctgccg caaggggcct ggactgcagg cctgacctgc tccctgctcc gtgtctgtcc
1261 taggacgtcc cctcccgctc cccgatggtg gcgtggacat ggttatttat ctctgctcct
1321 tcttgcctgg aggagggcag tgccagccct ggggttctgg gattccagcc ctcctggagc
1381 cttttgttcc ccatgtggtc tcagtgaccc gtccccctga cagtgggctc ggggagctgc
1441 atcacccagc cttccccttc tccgactgca gggtctgatg tcatcgttga cagcctttgc
1501 ttcgtggggg cctggcaggg cccctgcctc cccgaccccc gacccactgc aaacccccgt
1561 tcccccgcac tcctcttctc ccagcccatc cctccggccc ctgtgcctct gcggccccag
1621 cccagctccc agggccgtca cctgcttggc cctggcccag ctccctgccc tgagtcctga
1681 gccagtgcct ggtgtttcct gggctcggta ctgggccccc aggccatcca ggctttgcca
1741 cggccagttg gtcctccctg gggaactggg tgcgggtgga gtactgggag gcaggaggtg
1801 gcccggggag gccttgtggc tcctcccctc gctcctcgcc ctgggcctca gcttcctcat
1861 caatagaaag gatgtgttcg gggtgggggc gtcaggtgag aacgtttgct gggaaggaga
1921 ggacttgggg catggcctct ggggccaccc ttcctggaac tcggagagga aggtccgggc
1981 cctcgggaag ccttggacag aaccctccac cccgcagacc aggcgccgtg tgtgtgtggg
2041 agagaaggag gcccgtgttg agctcaggga gaccccggtg tgtccgttct ttagcaatat
2101 aacctaccca gtgcgtgccg agcaggcttg gtggggaagg gacttgagct gggcaagtcc
2161 tggcctggca cccgcagccg tctcccttcc gtggcccagg gaggtgtttg ctgtccgaag
2221 gacctgggcc ggcccatggg agcctggggt tctgtccaga taggaccagg gggtctcact
2281 ttggccacca gttcttcgcc cagcacctct gccctccaga acctgcagcc tggaggggtg
2341 aagggacaac cacccctctt tcctccaggt tggcagggga ccctcttctc ccgtctgccc
2401 tgcgggttgc ccgcctcctc cagagacttg cccaagggcc catcaccact ggcctctggg
2461 cacttgtgct gagactctgg gacccaggca gctgccacct tgtcaccatg agagaatttg
2521 gggagtgctt gcatgctagc cagcaggctc ctgtctgggt gccacggggc cagcattttg
2581 gagggagctt ccttccttcc ttcctggaca ggtcgtcagg atggatgcac tgactgaccg
2641 tctggggctc aggctggtgt gggatgcagc cggccgatga gaaaataaag ccatattgaa
2701 tgataaaaaa aaaaaaaaaa aaaaaaaaaa a
//