LOCUS BC007272 1288 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens COP9 constitutive photomorphogenic homolog subunit 5
(Arabidopsis), mRNA (cDNA clone MGC:15591 IMAGE:3161025), complete
cds.
ACCESSION BC007272
VERSION BC007272.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1288)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1288)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 22 Row: i Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38027922.
FEATURES Location/Qualifiers
source 1..1288
/db_xref="H-InvDB:HIT000033110"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15591 IMAGE:3161025"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1288
/gene="COPS5"
/gene_synonym="CSN5"
/gene_synonym="JAB1"
/gene_synonym="MGC3149"
/gene_synonym="MOV-34"
/gene_synonym="SGN5"
/db_xref="GeneID:10987"
/db_xref="HGNC:HGNC:2240"
/db_xref="MIM:604850"
CDS 110..1114
/gene="COPS5"
/gene_synonym="CSN5"
/gene_synonym="JAB1"
/gene_synonym="MGC3149"
/gene_synonym="MOV-34"
/gene_synonym="SGN5"
/codon_start=1
/product="COP9 constitutive photomorphogenic homolog
subunit 5 (Arabidopsis)"
/protein_id="AAH07272.1"
/db_xref="GeneID:10987"
/db_xref="HGNC:HGNC:2240"
/db_xref="MIM:604850"
/translation="MAASGSGMAQKTWELANNMQEAQSIDEIYKYDKKQQQEILAAKP
WTKDHHYFKYCKISALALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEG
TETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQ
FQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPDEGPSEYQTIPLNKIEDFGVHC
KQYYALEVSYFKSSLDRKLLELLWNKYWVNTLSSSSLLTNADYTTGQVFDLSEKLEQS
EAQLGRGSFMLGLETHDRKSEDKLAKATRDSCKTTIEAIHGLMSQVIKDKLFNQINIS
"
BASE COUNT 413 a 252 c 302 g 321 t
ORIGIN
1 gtaagagttt gttcccgtgg tgcggagggt caaggcccac acccggaaac ctagcgaggt
61 aaagttgcgt cttggttgta gagacgacaa cttctccgct tcctcggcga tggcggcgtc
121 cgggagcggt atggcccaga aaacctggga actggccaac aacatgcagg aagctcagag
181 tatcgatgaa atctacaaat acgacaagaa acagcagcaa gaaatcctgg cggcgaagcc
241 ctggactaag gatcaccatt actttaagta ctgcaaaatc tcagcattgg ctctgctgaa
301 gatggtgatg catgccagat cgggaggcaa cttggaagtg atgggtctga tgctaggaaa
361 ggtggatggt gaaaccatga tcattatgga cagttttgct ttgcctgtgg agggcactga
421 aacccgagta aatgctcagg ctgctgcata tgaatacatg gctgcataca tagaaaatgc
481 aaaacaggtt ggccgccttg aaaatgcaat cgggtggtat catagccacc ctggctatgg
541 ctgctggctt tctgggattg atgttagtac tcagatgctc aatcagcagt tccaggaacc
601 atttgtagca gtggtgattg atccaacaag aacaatatcc gcagggaaag tgaatcttgg
661 cgcctttagg acatacccaa agggctacaa acctcctgat gaaggacctt ctgagtacca
721 gactattcca cttaataaaa tagaagattt tggtgtacac tgcaaacaat attatgcctt
781 agaagtctca tatttcaaat cctctttgga tcgcaaattg cttgagctgt tgtggaataa
841 atactgggtg aatacgttga gttcttctag cttgcttact aatgcagact ataccactgg
901 tcaggtcttt gatttgtctg aaaagttaga gcagtcagaa gcccagctgg gacgagggag
961 tttcatgttg ggtttagaaa cgcatgaccg aaaatcagaa gacaaacttg ccaaagctac
1021 aagagacagc tgtaaaacta ccatagaagc tatccatgga ttgatgtctc aggttattaa
1081 ggataaactg tttaatcaaa ttaacatctc ttaaacagtc tctgagaagt actttacctg
1141 aaagacagta tgagaaaaat attcaagtaa cactttaaaa ccagttaccc aaaatctgat
1201 tagaagtata aggtgctctg aagtgtccta aatattaata tcctgtaata aagctcttta
1261 aaatgaaaaa aaaaaaaaaa aaaaaaaa
//