LOCUS BC007252 1621 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens collagen, type II, alpha 1, mRNA (cDNA clone
IMAGE:3010564), complete cds.
ACCESSION BC007252
VERSION BC007252.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1621)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1621)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 22 Row: e Column: 15
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1621
/db_xref="H-InvDB:HIT000033097"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3010564"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1621
/gene="COL2A1"
/gene_synonym="ANFH"
/gene_synonym="AOM"
/gene_synonym="COL11A3"
/db_xref="GeneID:1280"
/db_xref="HGNC:HGNC:2200"
/db_xref="MIM:120140"
CDS 334..1140
/gene="COL2A1"
/gene_synonym="ANFH"
/gene_synonym="AOM"
/gene_synonym="COL11A3"
/codon_start=1
/product="COL2A1 protein"
/protein_id="AAH07252.1"
/db_xref="GeneID:1280"
/db_xref="HGNC:HGNC:2200"
/db_xref="MIM:120140"
/translation="MSAFAGLGPREKGPDPLQYMRADQAAGGLRQHDAEVDATLKSLN
NQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGE
TCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLR
LLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDG
CTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL"
BASE COUNT 425 a 469 c 407 g 320 t
ORIGIN
1 ccagggtcct caaggcccca gaggtgacaa aggagaggct ggagagcctg gcgagagagg
61 cctgaaggga caccgtggct tcactggtct gcagggtctg cccggccctc ctggtccttc
121 tggagaccaa ggtgcttctg gtcctgctgg tccttctggc cctagaggtc ctcctggccc
181 cgtcggtccc tctggcaaag atggtgctaa tggaatccct ggccccattg ggcctcctgg
241 tccccgtgga cgatcaggcg aaaccggcct gctggtcctc ctggaaatcc tggaccccct
301 ggtcctccag gtccccctgg ccctggcatc gacatgtccg cctttgctgg cttaggcccg
361 agagagaagg gccccgaccc cctgcagtac atgcgggccg accaggcagc cggtggcctg
421 agacagcatg acgccgaggt ggatgccaca ctcaagtccc tcaacaacca gattgagagc
481 atccgcagcc ccgagggctc ccgcaagaac cctgctcgca cctgcagaga cctgaaactc
541 tgccaccctg agtggaagag tggagactac tggattgacc ccaaccaagg ctgcaccttg
601 gacgccatga aggttttctg caacatggag actggcgaga cttgcgtcta ccccaatcca
661 gcaaacgttc ccaagaagaa ctggtggagc agcaagagca aggagaagaa acacatctgg
721 tttggagaaa ccatcaatgg tggcttccat ttcagctatg gagatgacaa tctggctccc
781 aacactgcca acgtccagat gaccttccta cgcctgctgt ccacggaagg ctcccagaac
841 atcacctacc actgcaagaa cagcattgcc tatctggacg aagcagctgg caacctcaag
901 aaggccctgc tcatccaggg ctccaatgac gtggagatcc gggcagaggg caatagcagg
961 ttcacgtaca ctgccctgaa ggatggctgc acgaaacata ccggtaagtg gggcaagact
1021 gttatcgagt accggtcaca gaagacctca cgcctcccca tcattgacat tgcacccatg
1081 gacataggag ggcccgagca ggaattcggt gtggacatag ggccggtctg cttcttgtaa
1141 aaacctgaac ccagaaacaa cacaatccgt tgcaaaccca aaggacccaa gtactttcca
1201 atctcagtca ctctaggact ctgcactgaa tggctgacct gacctgatgt ccattcatcc
1261 caccctctca cagttcggac ttttctcccc tctctttcta agagacctga actgggcaga
1321 ctgcaaaata aaatctcggt gttctattta tttattgtct tcctgtaaga ccttcgggtc
1381 aaggcagagg caggaaacta actggtgtga gtcaaatgcc ccctgagtga ctgcccccag
1441 cccaggccag aagacctccc ttcaggtgcc gggcgcagga actgtgtgtg tcctacacaa
1501 tggtgctatt ctgtgtcaaa cacctctgta ttttttaaaa catcaattga tattaaaaat
1561 gaaaagatta ttggaaagta aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1621 a
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