LOCUS BC007214 2235 bp mRNA linear HUM 27-APR-2005
DEFINITION Homo sapiens Vac14 homolog (S. cerevisiae), mRNA (cDNA clone
IMAGE:2819370), partial cds.
ACCESSION BC007214
VERSION BC007214.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2235)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2235)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 22 Row: a Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 39780551.
FEATURES Location/Qualifiers
source 1..2235
/db_xref="H-InvDB:HIT000033074"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:2819370"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2235
/gene="VAC14"
/gene_synonym="ArPIKfyve"
/gene_synonym="FLJ10305"
/gene_synonym="TRX"
/db_xref="GeneID:55697"
/db_xref="MIM:604632"
CDS <1..1729
/gene="VAC14"
/gene_synonym="ArPIKfyve"
/gene_synonym="FLJ10305"
/gene_synonym="TRX"
/codon_start=2
/product="VAC14 protein"
/protein_id="AAH07214.2"
/db_xref="GeneID:55697"
/db_xref="MIM:604632"
/translation="INLLDYLPEILDGLFQILGDNGKEIRKMCEVVLGEFLKEIKKNP
SSVKFAEMANILVIHCQTTDDLIQLTAMCWMREFIQLAGRVMLPYSSGILTAVLPCLA
YDDRKKSIKEVANVCNQSLMKLVTPEDDELDELRPGQRQAEPTPDDALPKQEGTASGG
PDGSCDSSFSSGISVFTAASTERAPVTLHLDGIVQVLNCHLSDTAIGMMTRIAVLKWL
YHLYIKTPRKMFRHTDSLFPILLQTLSDESDEVILKDLEVLAEIASSPAGQTDDPGPL
DGPDLQASHSELQVPTPGRAGLLNTSGTKGLECSPSTPTMNSYFYKFMINLLKRFSSE
RKLLEVRGPFIIRQLCLLLNAENIFHSMADILLREEDLKFASTMVHALNTILLTSTEL
FQLRNQLKDLKTLESQNLFCCLYRSWCHNPVTTVSLCFLTQNYRHAYDLIQKFGDLEV
TVDFLAEVDKLVQLIECPIFTYLRLQLLDVKNNPYLIKALYGLLMLLPQSSAFQLLSH
RLQCVPNPELLQTEDSLKAAPKSQKADSPSIDYAELLQHFEKVQNKHLEVRHQRSGRG
DHLDRRVVL"
BASE COUNT 526 a 697 c 574 g 438 t
ORIGIN
1 cattaacctg ctggattacc tgccggagat cctggatgga ctcttccaga tcctgggtga
61 caatggcaaa gagattcgca aaatgtgtga ggttgttctt ggagaattct taaaagaaat
121 taagaagaac ccctccagtg tgaagtttgc tgagatggcc aacatcctgg tgatccactg
181 ccagacaaca gatgacctca tccagctgac agccatgtgc tggatgcggg agttcatcca
241 gctggcgggc cgcgtcatgc tgccttactc ctccgggatc ctgactgctg tcttgccctg
301 cttggcctac gatgaccgca agaaaagcat caaagaagtg gccaacgtgt gcaaccagag
361 cctgatgaag ctggtcaccc ccgaggacga cgagctggat gagctgagac ctgggcagag
421 gcaggcagag cccacccctg acgatgccct gccaaagcag gagggcacag ccagtggagg
481 tccagatggt tcctgtgact ccagcttcag tagcggcatc agtgtcttca ctgcagccag
541 cactgaaaga gccccagtga cccttcacct cgacgggatc gtgcaggtcc taaactgcca
601 cctcagtgac acggccattg ggatgatgac caggattgca gttctcaagt ggctctacca
661 cctctacatc aaaactcctc ggaagatgtt ccggcacacg gacagcctct ttcccatcct
721 actgcagacg ttatcggatg aatcggatga ggtgatcctg aaggacctgg aggtgctggc
781 agaaatcgct tcctcccccg caggccagac ggatgaccca ggccccctcg atggccctga
841 cctccaggcc agccactcag agctccaggt gcccacccct ggcagagccg gcctactgaa
901 cacctctggt accaaaggct tagaatgttc tccttcaact cccaccatga attcttactt
961 ttataagttc atgatcaacc ttctcaagag attcagcagc gaacggaagc tcctggaggt
1021 cagaggccct ttcatcatca ggcagctgtg cctcctgctg aatgcggaga acatcttcca
1081 ctcaatggca gacatcctgc tgcgggagga ggacctcaag ttcgcctcga ccatggtcca
1141 cgccctcaac accatcctgc tgacctccac agagctcttc cagctaagga accagctgaa
1201 ggacctgaag accctggaga gccagaacct gttctgctgc ctgtaccgct cctggtgcca
1261 caacccagtc accacggtgt ccctctgctt cctcacccag aactaccggc acgcctatga
1321 cctcatccag aagtttgggg acctggaggt caccgtggac ttcctcgcag aggtggacaa
1381 gctggtgcag ctgattgagt gccccatctt cacatatctg cgcctgcagc tgctggacgt
1441 gaagaacaac ccctacctga tcaaggccct ctacggcctg ctcatgctcc tgccgcagag
1501 cagcgccttc cagctgctct cgcaccggct ccagtgcgtg cccaaccctg agctgctgca
1561 gaccgaagac agtctaaagg cagcccccaa gtcccagaaa gctgactccc ctagcatcga
1621 ctacgcagag ctgctgcagc actttgagaa ggtccagaac aagcacctgg aagtgcggca
1681 ccagcggagc gggcgtgggg accacctgga ccggagggtt gtcctctgac aggcctggca
1741 cggaggaggg cccaccgagt ggtcccatga aacactaagg gtcgtcacgc cctcccgagg
1801 agctcaagga cctgcctgtc aggaccaggg ctgggcctgc caacccaggg cagtgttggg
1861 gccggaggct gctgtgtctg cccaagctcc tctcagagtc cagtccccag gcctccagcg
1921 ctgtcagctg caccctggca ttctcacaga gctggctgcc cacccagtgg ggggctatag
1981 cctcagagac cactcatcct ctggaatcaa cctctttcta ataccctctt ggaaaaagag
2041 cttgcccctc ctccagcaca ctagagctct ggccttgtgt gtatatgtat acatacgtga
2101 acacatgcct gtgtgtgtgt gtgtgtgtgt gtacttgtat gcacgtaggc accagcacaa
2161 agatctgaat gatgcacccc acccccaccc caataaagaa ataacagaaa accctcaaaa
2221 aaaaaaaaaa aaaaa
//