LOCUS BC007085 973 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens serine palmitoyltransferase, long chain base subunit
1, mRNA (cDNA clone IMAGE:4094854), complete cds.
ACCESSION BC007085
VERSION BC007085.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 973)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 973)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 21 Row: b Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 30474870
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..973
/db_xref="H-InvDB:HIT000033037"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4094854"
/tissue_type="Brain, glioblastoma"
/clone_lib="NIH_MGC_57"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..973
/gene="SPTLC1"
/gene_synonym="HSAN"
/gene_synonym="HSAN1"
/gene_synonym="LBC1"
/gene_synonym="LCB1"
/gene_synonym="MGC14645"
/gene_synonym="SPT1"
/gene_synonym="SPTI"
/db_xref="GeneID:10558"
/db_xref="HGNC:HGNC:11277"
/db_xref="MIM:605712"
CDS 14..445
/gene="SPTLC1"
/gene_synonym="HSAN"
/gene_synonym="HSAN1"
/gene_synonym="LBC1"
/gene_synonym="LCB1"
/gene_synonym="MGC14645"
/gene_synonym="SPT1"
/gene_synonym="SPTI"
/codon_start=1
/product="serine palmitoyltransferase, long chain base
subunit 1"
/protein_id="AAH07085.1"
/db_xref="GeneID:10558"
/db_xref="HGNC:HGNC:11277"
/db_xref="MIM:605712"
/translation="MATATEQWVLVEMVQALYEAPAYHLILEGILILWIIRLLFSKTY
KLQERSDLTVKEKEELIEEWQPEPLVPPVPKDHPALNYNIVSGPPSHKTVVNGKECIN
FASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFE"
BASE COUNT 302 a 189 c 229 g 253 t
ORIGIN
1 gaagcggcta actatggcga ccgccacgga gcagtgggtt ctggtggaga tggtacaggc
61 gctttacgag gctcctgctt accatcttat tttggaaggg attctgatcc tctggataat
121 cagacttctt ttctctaaga cttacaaatt acaagaacga tctgatctta cagtcaagga
181 aaaagaagaa ctgattgaag agtggcaacc agaacctctt gttcctcctg tcccaaaaga
241 ccatcctgct ctcaactaca acatcgtttc aggccctcca agccacaaaa ctgtggtgaa
301 tggaaaagaa tgtataaact tcgcctcatt taattttctt ggattgttgg ataaccctag
361 ggttaaggca gcagctttag catctctaaa gaagtatggc gtggggactt gtggacccag
421 aggattttat ggcacatttg aatgaagatg aaggatcatt gatttccttg tgtatggata
481 atccgggaac aggccaacta aatatttgat gaatgtatga tttcaaatac agtgaattcc
541 ctgggagtca tcaaagaaga ccggcatttt atggttgttt ttattaagtg tatattcttt
601 gctcctgaaa atgttattaa ataattgttt aggccgggca tggtggctca tgcctgtaat
661 cccagcactt tcaaaggctg aggcaggcag atcacctgag gtcaggagtt caaaaccagc
721 ctggccaaca tgctgaaacc tcgtctctac taaaaataca aaaattagct gggcgtggtg
781 gtggatgcct gtggtcccag ctacgtggga ggctgaggtg ggagaattgc ttcaacctgg
841 ggggcggagg ttgcagtgag ccgagatcat gccactgcac tccagcctgg gcaacagagc
901 aagactgtct caaaaataaa taaataaata aaattgttta aataaaaaaa aaaaaaaaaa
961 aaaaaaaaaa aaa
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