LOCUS BC006989 1936 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens Vps20-associated 1 homolog (S. cerevisiae), mRNA (cDNA
clone MGC:12227 IMAGE:3961637), complete cds.
ACCESSION BC006989
VERSION BC006989.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1936)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1936)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 16 Row: c Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21361740.
FEATURES Location/Qualifiers
source 1..1936
/db_xref="H-InvDB:HIT000032969"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12227 IMAGE:3961637"
/tissue_type="Bladder, carcinoma"
/clone_lib="NIH_MGC_53"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1936
/gene="VTA1"
/gene_synonym="DRG-1"
/gene_synonym="DRG1"
/gene_synonym="HSPC228"
/gene_synonym="LIP5"
/gene_synonym="My012"
/gene_synonym="SBP1"
/db_xref="GeneID:51534"
/db_xref="HGNC:HGNC:20954"
/db_xref="MIM:610902"
CDS 26..949
/gene="VTA1"
/gene_synonym="DRG-1"
/gene_synonym="DRG1"
/gene_synonym="HSPC228"
/gene_synonym="LIP5"
/gene_synonym="My012"
/gene_synonym="SBP1"
/codon_start=1
/product="Vps20-associated 1 homolog (S. cerevisiae)"
/protein_id="AAH06989.1"
/db_xref="GeneID:51534"
/db_xref="HGNC:HGNC:20954"
/db_xref="MIM:610902"
/translation="MAALAPLPPLPAQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQ
TGMKIDSKTPECRKFLSKLMDQLEALKKQLGDNEAITQEIVGCAHLENYALKMFLYAD
NEDRAGRFHKNMIKSFYTASLLIDVITVFGELTDENVKHRKYARWKATYIHNCLKNGE
TPQAGPVGIEEDNDIEENEDAGAASLPTQPTQPSSSSTYDPSNMPSGNYTGIQIPPGA
HAPANTPAEVPHSTGVASNTIQPTPQTIPAIDPALFNTISQGDVRLTPEDFARAQKYC
KYAGSALQYEDVSTAVQNLQKALKLLTTGRE"
BASE COUNT 650 a 348 c 380 g 558 t
ORIGIN
1 aggaagtggt gagttcggag tagagatggc cgcgcttgca ccgctgcccc cgctccccgc
61 acagttcaag agcatacagc atcatctgag gacggctcag gagcatgaca agcgagaccc
121 tgtggtggct tattactgtc gtttatacgc aatgcagact ggaatgaaga tcgatagtaa
181 aactcctgaa tgtcgcaaat ttttatcaaa gttaatggat cagttagaag ctctaaagaa
241 gcagttgggt gataatgaag ctattactca agaaatagtg ggctgtgccc atttggagaa
301 ttatgctttg aaaatgtttt tgtatgcaga caatgaagat cgtgctggac gatttcacaa
361 aaacatgatc aagtccttct atactgcaag tcttttgata gatgtcataa cagtatttgg
421 agaactcact gatgaaaatg tgaaacacag gaagtatgcc agatggaagg caacatacat
481 ccataattgt ttaaagaatg gggagactcc tcaagcaggc cctgttggaa ttgaagaaga
541 taatgatatt gaagaaaatg aagatgctgg agcagcctct ctgcccactc agccaactca
601 gccatcatca tcttcaactt atgacccaag caacatgcca tcaggcaact atactggaat
661 acagattcct ccgggtgcac acgctccagc taatacacca gcagaagtgc ctcacagcac
721 aggtgtagca agtaatacta tccaacctac tccacagact atacctgcca ttgatcccgc
781 acttttcaat acaatttccc agggggatgt tcgtctaacc ccagaagact ttgctagagc
841 tcagaagtac tgcaaatatg ctggcagtgc tttgcagtat gaagatgtaa gcactgctgt
901 ccagaatcta caaaaggctc tcaagttact gacgacaggc agagaatgaa gcctttgtat
961 gacagaccca tgtatttttg gcatgaggaa ctaacagtcc attactctat cttcagccta
1021 tcaggatcac agttttaagg aagacttggt tttgttgaat atgacaatga aatctgtgtg
1081 tatcagattt ttattgaagc attcatcagc agcctcaacc agttttcatt gtccatttac
1141 tagattcaat cgtctctgag tatatagggc tgatgttagc aagaccctaa aaatgtccat
1201 tgaaccctgc ttcaaaaaat gaaaacacac ctctataaaa tgtgtactgg gaataagctt
1261 tgtatttaca tacattaggg gaatttttta aaatctgtaa tgtttggaca aacagatgat
1321 attactttgc tataaaatta taaatgtaac ttttaataaa gatagccaga atattctaaa
1381 ttagaaatta cgtttttgtt tccctcaaga cataaaacaa atataaacat tctaaactgc
1441 tggatgaatc tgaaaagaca ttaagttcaa attttaattt attctcatat taaatataac
1501 tccattaaaa gtttaaaatt tcatgggaga aaatataata aggtaaagag gtagaatcac
1561 tttcagactt aagaataatg ttgatttccc aagtgcttta ccttatctgt taaagcgtaa
1621 gatgaattgg tatttgcttc ataggcagtt tgactgcatg tattagagaa tgaaaagaag
1681 atatttgtag taatgcctgg aaacttggtg ctttaaatta aggtactcct ctgctgctgt
1741 agaatggatt ccacacagtg gatagctatg ggtgattcag aatattatgt ttagattccc
1801 atttgttaag tttataagtt ttgtggggaa ttatgaactt actgtgtact acctgcattt
1861 gtgctgtgtg aaaaataaat acaaggattc gtttagctaa ttcaacaaaa aaaaaaaaaa
1921 aaaaaaaaaa aaaaaa
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