LOCUS BC006978 862 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens thymocyte nuclear protein 1, mRNA (cDNA clone
MGC:12187 IMAGE:3682324), complete cds.
ACCESSION BC006978
VERSION BC006978.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 862)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 862)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 16 Row: e Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40806220.
FEATURES Location/Qualifiers
source 1..862
/db_xref="H-InvDB:HIT000032962"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12187 IMAGE:3682324"
/tissue_type="Bladder, carcinoma"
/clone_lib="NIH_MGC_53"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..862
/gene="THYN1"
/gene_synonym="HSPC144"
/gene_synonym="MDS012"
/gene_synonym="MGC12187"
/gene_synonym="MY105"
/gene_synonym="THY28"
/gene_synonym="THY28KD"
/db_xref="GeneID:29087"
/db_xref="HGNC:HGNC:29560"
CDS 159..659
/gene="THYN1"
/gene_synonym="HSPC144"
/gene_synonym="MDS012"
/gene_synonym="MGC12187"
/gene_synonym="MY105"
/gene_synonym="THY28"
/gene_synonym="THY28KD"
/codon_start=1
/product="thymocyte nuclear protein 1"
/protein_id="AAH06978.1"
/db_xref="GeneID:29087"
/db_xref="HGNC:HGNC:29560"
/translation="MSRPRKRLAGTSGSDKGLSGKRTKTENSGEALAKVEDSNPQKTS
ATKNCLKNLSSHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFL
RAMKLGEEAFFYHSNCKEPGIAGLMKIVKEAYPDHTQFEKNNPHYDPSSKEDNPKWSM
KSLILF"
BASE COUNT 279 a 186 c 214 g 183 t
ORIGIN
1 acagcctgcg gcgcagcgga ggcggaccgc agtcgagtct gcagagtgtt gggtctgtag
61 ccagcaaatt acttcatcat ctagattatc cattcagttg atcctaatta gcaaggataa
121 caagaatcgt ccgcactaaa gtcccctgca gcgtgaccat gtcgagaccc cggaagaggc
181 tggctgggac ttctggttca gacaagggac tatcaggaaa acgcaccaaa actgagaact
241 caggtgaggc attagctaaa gtggaggact ccaaccctca gaagacttca gccactaaaa
301 actgtttgaa gaatctaagc agccactggc tgatgaagtc agagccagag agccgcctag
361 agaaaggtgt agatgtgaag ttcagcattg aggatctcaa agcacagccc aaacagacaa
421 catgctggga tggtgttcgt aactaccagg ctcggaactt ccttagagcc atgaagctgg
481 gagaagaagc cttcttctac catagcaact gcaaagagcc aggcatcgca ggactcatga
541 agatcgtgaa agaggcttac ccagaccaca cacagtttga gaaaaacaat ccccattatg
601 acccatctag caaagaggac aaccctaagt ggtccatgaa gagtttgatt ttgttttgag
661 cctggaggaa aaggaaccaa gttaactgag atactgctgc tggaatgggc gagacattgc
721 tgcaaagaag tcaagctttt ttcagacaaa aggtgtgagg gggcttgctt ggtatgctta
781 cctgggcttg tgtacctcag tggtttttgt gtactttttt caataaaata ccaaaaaaaa
841 aaaaaaaaaa aaaaaaaaaa aa
//