LOCUS BC006821 803 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens chromobox homolog 5 (HP1 alpha homolog, Drosophila),
mRNA (cDNA clone MGC:4985 IMAGE:3448801), complete cds.
ACCESSION BC006821
VERSION BC006821.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 803)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 803)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 3 Row: f Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 6912291.
FEATURES Location/Qualifiers
source 1..803
/db_xref="H-InvDB:HIT000032949"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4985 IMAGE:3448801"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..803
/gene="CBX5"
/gene_synonym="HP1"
/gene_synonym="HP1-ALPHA"
/gene_synonym="HP1Hs-alpha"
/db_xref="GeneID:23468"
/db_xref="HGNC:HGNC:1555"
/db_xref="MIM:604478"
CDS 69..644
/gene="CBX5"
/gene_synonym="HP1"
/gene_synonym="HP1-ALPHA"
/gene_synonym="HP1Hs-alpha"
/codon_start=1
/product="chromobox homolog 5 (HP1 alpha homolog,
Drosophila)"
/protein_id="AAH06821.1"
/db_xref="GeneID:23468"
/db_xref="HGNC:HGNC:1555"
/db_xref="MIM:604478"
/translation="MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGF
SEEHNTWEPEKNLDCPELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIK
SKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKC
PQIVIAFYEERLTWHAYPEDAENKEKETAKS"
BASE COUNT 292 a 138 c 198 g 175 t
ORIGIN
1 gggaaagaaa gaactggggc gatccgggac ctggtggcct tagtctttca ggtggaacgg
61 tgtgcgacat gggaaagaaa accaagcgga cagctgacag ttcttcttca gaggatgagg
121 aggagtatgt tgtggagaag gtgctagaca ggcgcgtggt taagggacaa gtggaatatc
181 tactgaagtg gaaaggcttt tctgaggagc acaatacttg ggaacctgag aaaaacttgg
241 attgccctga gctaatttct gaatttatga aaaagtataa gaagatgaag gagggtgaaa
301 ataataaacc cagggagaag tcagaaagta acaagaggaa atccaatttc tcaaacagtg
361 ccgatgacat caaatctaaa aaaaagagag agcagagcaa tgatatcgct cggggctttg
421 agagaggact ggaaccagaa aagatcattg gggcaacaga ttcctgtggt gatttaatgt
481 tcctaatgaa atggaaagac acagatgaag ctgacctggt tcttgcaaaa gaagctaatg
541 tgaaatgtcc acaaattgtg atagcatttt atgaagagag actgacatgg catgcatatc
601 ctgaggatgc ggaaaacaaa gagaaagaaa cagcaaagag ctaaaggagg ggatggtctc
661 tgtcatttct ctttgtacat aatacattca cctccctgcc tcctctcctt tctacccacc
721 cctttctatc ctaaacacat ccataaaaaa tgtgcttatc actgtgctcc acaaaaaaaa
781 aaaaaaaaaa aaaaaaaaaa aaa
//