LOCUS BC006575 2827 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens MMS19 nucleotide excision repair homolog (S.
cerevisiae), mRNA (cDNA clone IMAGE:3543044), partial cds.
ACCESSION BC006575
VERSION BC006575.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2827)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2827)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (24-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Nov 6, 2003 this sequence version replaced BC006575.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 11 Row: i Column: 20.
FEATURES Location/Qualifiers
source 1..2827
/db_xref="H-InvDB:HIT000032931"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3543044"
/tissue_type="Lymph, Burkitt lymphoma"
/clone_lib="NIH_MGC_8"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2827
/gene="MMS19"
/gene_synonym="hMMS19"
/gene_synonym="MET18"
/db_xref="GeneID:64210"
/db_xref="HGNC:HGNC:13824"
CDS <1..2412
/gene="MMS19"
/gene_synonym="hMMS19"
/gene_synonym="MET18"
/codon_start=1
/product="MMS19 protein"
/protein_id="AAH06575.2"
/db_xref="GeneID:64210"
/db_xref="HGNC:HGNC:13824"
/translation="PPPNDPHGIQREDLILSLRAVLASTPRFAEFLLPLLIEKVDSEV
LSAKLDSLQTLNACCAVYGQKELKDFLPSLWASIRREVFQTASERVEAEGLAALHSLT
ACLSRSVLRADAEDLLDSFLSNILQDCRHHLCEPDMKLVWPSAKLLQAAAGASARACD
SVTSNVLPLLLEQFHKHSQSSQRRTILEMLLGFLKLQQKWSYEDKDQRPLNGFKDQLC
SLVFMALTDPSTQLQLVGIRTLTVLGAQPDLLSYEDLELAVGHLYRLSFLKEDSQSCR
VAALEASGTLAALYPVAFSSHLVPKLAEELRVGESNLTNGDEPTQCSRHLCCLQALSA
VSTHPSIVKETLPLLLQHLWQVNRGNMVAQSSDVIAVCQSLRQMAEKCQQDPESCWYF
HQTAIPCLLALAVQASMPEKEPSVLRKVLLEDEVLAAMVSVIGTATTHLSPELAAQSV
THIVPLFLDGNVSFLPENSFPSRFQPFQDGSSGQRRLIALLMAFVCSLPRNVEIPQLN
QLMRELLELSCCHSCPFSSTAAAKCFAGLLNKHPAGQQLDEFLQLAVDKVEAGLDSGP
CRSQAFTLLLWVTKALVLRYHPLSSCLTARLMGLLSDPELGPAAADGFSLLMSDCTDV
LTRAGHAEVRIMFRQRFFTDNVPALVQGFHAAPQDVKPNYLKGLSHVLNRLPKPVLLP
ELPTLLSLLLEALSCPDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSPS
MAVRIAALQCMHALTRLPTPVLLPYKPQVIRALAKPLDDKKRLVRKEAVSARGEWFLL
GSPGS"
BASE COUNT 634 a 778 c 731 g 684 t
ORIGIN
1 cctccaccta atgatcccca tggtatccag agagaagacc tcatcctgag tcttcgcgct
61 gtgctggctt ctacaccacg atttgctgag tttctgctgc ccctgttgat tgagaaagtg
121 gattctgagg ttctgagtgc caagttggat tctctacaga ctctgaatgc ttgctgtgct
181 gtgtatggac agaaggaact gaaggacttc ctccccagcc tttgggcttc tatccgcaga
241 gaggtgttcc agacggcaag tgagcgggtg gaggcagagg gcctggcggc cctccactcc
301 ctgactgcgt gtttgtctcg ctctgtgctg agggctgatg ctgaggacct ccttgactcc
361 ttccttagca acattctaca ggactgcagg caccacctgt gtgaaccgga catgaaactg
421 gtgtggccta gtgccaagct gttgcaggca gctgcaggtg catctgcccg ggcctgtgac
481 tctgtcacca gcaatgtact gcctttactg ctggaacagt tccacaagca cagtcagagc
541 agccagcggc ggacaatcct tgaaatgctc ctgggtttct tgaagctgca gcagaaatgg
601 agctatgaag acaaagatca aaggcctctg aatggcttca aggaccagct gtgctcactg
661 gtattcatgg ctctaacaga ccccagcacc cagcttcagc ttgttggcat ccgtacactg
721 acagtcttgg gtgcccagcc agatctccta tcttatgagg acttggagct ggcagtgggt
781 cacctgtaca gactgagctt cctgaaggag gattcccaga gttgcagggt ggcagcactg
841 gaagcatcag gaaccctggc tgctctctac cctgtggcct tcagcagcca cctcgtaccc
901 aagctcgctg aggagctgcg tgtaggggag tcaaatttga ctaacggaga tgagcccacc
961 caatgctccc ggcatctgtg ctgtctgcaa gccttgtcag ctgtatcaac acatcccagc
1021 atcgtcaagg agacactgcc tctgctgctg cagcatctct ggcaagtgaa cagagggaat
1081 atggttgcac aatccagtga cgttattgct gtctgtcaga gcctcagaca gatggcagaa
1141 aaatgtcagc aggaccctga gagttgctgg tatttccacc agacagctat accttgcctg
1201 cttgccttgg ctgtgcaggc ctctatgcca gagaaggagc cctcagttct gagaaaagta
1261 ctattggagg atgaggtgtt ggctgccatg gtgtctgtca ttggcactgc tacaacccac
1321 ctgagccctg agttagctgc ccagagtgtg acacacattg tgcccctctt cttggatggc
1381 aacgtgtcct ttctgcctga aaacagcttc ccgagcagat tccagccatt ccaggatggc
1441 tcctcagggc agaggcggct gattgcactg cttatggcct ttgtctgctc cctgcctcga
1501 aatgtggaaa tccctcagct gaaccaactc atgcgggagc ttttggaact gagctgctgc
1561 cacagctgcc ccttttcttc caccgctgct gccaagtgct ttgcaggact cctcaacaag
1621 caccctgcag ggcagcagct ggatgaattc ctacagctag ctgtggacaa agtggaggct
1681 ggcctggact ctgggccctg tcgtagtcag gccttcactc ttcttctctg ggtaacaaag
1741 gccctagtgc tcagatacca tcctctcagc tcctgcctta cagcccggct catgggcctc
1801 ctgagtgacc cagaattagg tccagcagca gctgatggct tctctctgct catgtctgac
1861 tgcactgatg tgctgactcg tgctggccat gccgaagtgc ggatcatgtt ccgccagcgg
1921 ttcttcacag ataatgtgcc tgctttggtc cagggcttcc atgctgctcc ccaagatgtg
1981 aagccaaact acttgaaggg tctttctcat gtacttaaca ggctgcccaa gcctgtactc
2041 ttgccagagc tgcccacgct tctttccttg ctgctggagg ccctgtcctg ccctgactgt
2101 gtggtgcagc tctccaccct cagctgcctt cagcctcttc tactggaagc accccaagtc
2161 atgagtcttc acgtggacac cctcgtcacc aagtttctga acctcagctc tagcccttcc
2221 atggctgtcc ggatcgccgc actgcagtgc atgcatgctc tcactcgcct gcccacccct
2281 gtgctgctgc cgtacaaacc acaggtgatt cgggccttag ccaaacccct ggatgacaag
2341 aagagactgg tgcgcaagga agcagtgtca gccagagggg agtggtttct gttggggagc
2401 cctggcagct gagccctcag tcctggccta gactgttctg acaatctaac ctgggattac
2461 taactgttga gccatcttcc ccaaagcagg gaaaccactg gtctctgact gcctttccca
2521 cagacacagc acaaatgcta ggcctctgtt gcatggctgt acaaagaaca taagagtcca
2581 tatttctagt ggatttgtaa aataagtgtg tgtgagacac ttgcgtttga agaaagatct
2641 agggtcctgg gtctcttgca tttatatgtc agaaaagggg cgatatgctg ctgaggggtg
2701 agtgcatatg agtgtggccc tgaggaccag ggctggcaga tgttgtctac ctgctgaaga
2761 ataaagattt cttttggtaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2821 aaaaaaa
//