LOCUS BC006541 3392 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens integrin, beta 5, mRNA (cDNA clone MGC:2338
IMAGE:2958666), complete cds.
ACCESSION BC006541
VERSION BC006541.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3392)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3392)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (24-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC006541.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 2 Row: m Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34147573.
FEATURES Location/Qualifiers
source 1..3392
/db_xref="H-InvDB:HIT000032911"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2338 IMAGE:2958666"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3392
/gene="ITGB5"
/db_xref="GeneID:3693"
/db_xref="HGNC:HGNC:6160"
/db_xref="MIM:147561"
CDS 298..2697
/gene="ITGB5"
/codon_start=1
/product="integrin, beta 5"
/protein_id="AAH06541.1"
/db_xref="GeneID:3693"
/db_xref="HGNC:HGNC:6160"
/db_xref="MIM:147561"
/translation="MPRAPAPLYACLLGLCALLPRLAGLNICTSGSATSCEECLLIHP
KCAWCSKEDFGSPRSITSRCDLRANLVKNGCGGEIESPASSFHVLRSLPLSSKGSGSA
GWDVIQMTPQEIAVNLRPGDKTTFQLQVRQVEDYPVDLYYLMDLSLSMKDDLDNIRSL
GTKLAEEMRKLTSNFRLGFGSFVDKDISPFSYTAPRYQTNPCIGYKLFPNCVPSFGFR
HLLPLTDRVDSFNEEVRKQRVSRNRDAPEGGFDAVLQAAVCKEKIGWRKDALHLLVFT
TDDVPHIALDGKLGGLVQPHDGQCHLNEANEYTASNQMDYPSLALLGEKLAENNINLI
FAVTKNHYMLYKNFTALIPGTTVEILDGDSKNIIQLIINAYNSIRSKVELSVWDQPED
LNLFFTATCQDGVSYPGQRKCEGLKIGDTASFEVSLEARSCPSRHTEHVFALRPVGFR
DSLEVGVTYNCTCGCSVGLEPNSARCNGSGTYVCGLCECSPGYLGTRCECQDGENQSV
YQNLCREAEGKPLCSGRGDCSCNQCSCFESEFGKIYGPFCECDNFSCARNKGVLCSGH
GECHCGECKCHAGYIGDNCNCSTDISTCRGRDGQICSERGHCLCGQCQCTEPGAFGEM
CEKCPTCPDACSTKRDCVECLLLHSGKPDNQTCHSLCRDEVITWVDTIVKDDQEAVLC
FYKTAKDCVMMFTYVELPSGKSNLTVLREPECGNTPNAMTILLAVVGSILLVGLALLA
IWKLLVTIHDRREFAKFQSERSRARYEMASNPLYRKPISTHTVDFTFNKFNKSYNGTV
D"
BASE COUNT 762 a 926 c 995 g 709 t
ORIGIN
1 gcggagccag cccctcccct acccggagca gcccgctggg gccgtcccga gcggcgacac
61 actaggagtc ccggccggcc agccagggca gccgcggtcc cgggactcgg ccgtgagtgc
121 tgcgggacgg atggtggcgg cggggcgcgg gccagcgcgg gcgccgtgag ccggagctgc
181 gcgcggggca tgcggctgcg gcccccggcc ctcggccccc gcgctccggc cccagccccg
241 gccgccggcc cccgcggagt gcagcgaccg cgccgccgct gagggaggcg ccccaccatg
301 ccgcgggccc cggcgccgct gtacgcctgc ctcctggggc tctgcgcgct cctgccccgg
361 ctcgcaggtc tcaacatatg cactagtgga agtgccacct catgtgaaga atgtctgcta
421 atccacccaa aatgtgcctg gtgctccaaa gaggacttcg gaagcccacg gtccatcacc
481 tctcggtgtg atctgagggc aaaccttgtc aaaaatggct gtggaggtga gatagagagc
541 ccagccagca gcttccatgt cctgaggagc ctgcccctca gcagcaaggg ttcgggctct
601 gcaggctggg acgtcattca gatgacacca caggagattg ccgtgaacct ccggcccggt
661 gacaagacca ccttccagct acaggttcgc caggtggagg actatcctgt ggacctgtac
721 tacctgatgg acctctccct gtccatgaag gatgacttgg acaatatccg gagcctgggc
781 accaaactcg cggaggagat gaggaagctc accagcaact tccggttggg atttgggtct
841 tttgttgata aggacatctc tcctttctcc tacacggcac cgaggtacca gaccaatccg
901 tgcattggtt acaagttgtt tccaaattgc gtcccctcct ttgggttccg ccatctgctg
961 cctctcacag acagagtgga cagcttcaat gaggaagttc ggaaacagag ggtgtcccgg
1021 aaccgagatg cccctgaggg gggctttgat gcagtactcc aggcagccgt ctgcaaggag
1081 aagattggct ggcgaaagga tgcactgcat ttgctggtgt tcacaacaga tgatgtgccc
1141 cacatcgcat tggatggaaa attgggaggc ctggtgcagc cacacgatgg ccagtgccac
1201 ctgaacgagg ccaacgagta cactgcatcc aaccagatgg actatccatc ccttgccttg
1261 cttggagaga aattggcaga gaacaacatc aacctcatct ttgcagtgac aaaaaaccat
1321 tatatgctgt acaagaattt tacagccctg atacctggaa caacggtgga gattttagat
1381 ggagactcca aaaatattat tcaactgatt attaatgcat acaatagtat ccggtctaaa
1441 gtggagttgt cagtctggga tcagcctgag gatcttaatc tcttctttac tgctacctgc
1501 caagatgggg tatcctatcc tggtcagagg aagtgtgagg gtctgaagat tggggacacg
1561 gcatcttttg aagtatcatt ggaggcccga agctgtccca gcagacacac ggagcatgtg
1621 tttgccctgc ggccggtggg attccgggac agcctggagg tgggggtcac ctacaactgc
1681 acgtgcggct gcagcgtggg gctggaaccc aacagtgcca ggtgcaacgg gagcgggacc
1741 tatgtctgcg gcctgtgtga gtgcagcccc ggctacctgg gcaccaggtg cgagtgccag
1801 gatggggaga accagagcgt gtaccagaac ctgtgccggg aggcagaggg caagccactg
1861 tgcagcgggc gtggggactg cagctgcaac cagtgctcct gcttcgagag cgagttcggc
1921 aagatctatg ggcctttctg tgagtgcgac aacttctcct gtgccaggaa caagggagtc
1981 ctctgctcag gccatggcga gtgtcactgc ggggaatgca agtgccatgc aggttacatc
2041 ggggacaact gtaactgctc gacagacatc agcacatgcc ggggcagaga tggccagatc
2101 tgcagcgagc gtgggcactg tctctgtggg cagtgccaat gcacggagcc gggggccttt
2161 ggggagatgt gtgagaagtg ccccacctgc ccggatgcat gcagcaccaa gagagattgc
2221 gtcgagtgcc tgctgctcca ctctgggaaa cctgacaacc agacctgcca cagcctatgc
2281 agggatgagg tgatcacatg ggtggacacc atcgtgaaag atgaccagga ggctgtgcta
2341 tgtttctaca aaaccgccaa ggactgcgtc atgatgttca cctatgtgga gctccccagt
2401 gggaagtcca acctgaccgt cctcagggag ccagagtgtg gaaacacccc caacgccatg
2461 accatcctcc tggctgtggt cggtagcatc ctccttgttg ggcttgcact cctggctatc
2521 tggaagctgc ttgtcaccat ccacgaccgg agggagtttg caaagtttca gagcgagcga
2581 tccagggccc gctatgaaat ggcttcaaat ccattataca gaaagcctat ctccacgcac
2641 actgtggact tcaccttcaa caagttcaac aaatcctaca atggcactgt ggactgatgt
2701 ttccttctcc gaggggctgg agcggggatc tgatgaaaag gtcagactga aacgccttgc
2761 acggctgctc ggcttgatca cagctcccta ggtaggcacc acagagaaga ccttctagtg
2821 agcctgggcc aggagcccac agtgcctgta caggaaggtg cctggccatg tcacctggct
2881 gctaggccag agccatgcca ggctgcgtcc ctccgagctt gggataaagc aaggggacct
2941 tggcactctc agctttccct gccacatcca gcttgttgtc ccaatgaaat actgagatgc
3001 tgggctgtct ctcccttcca ggaatgctgg gcccccagcc tggccagaca agacgactgt
3061 caggaagggt cggagtctgt aaaaccagca tacagtttgg cttttttcac attgatcatt
3121 tttatatgaa ataaaaagat cctgcattta tggtgtagtt ctgagtcctg agacttttcc
3181 gcgtgatggc tatgccttgc acacaggtgt tggtgatggg gctgttgaga tgcctgttga
3241 aggtacatcg tttgcaaatg tcagtttcct ctcctgtccg tgtttgttta gtacttttat
3301 aatgaaaaga aacaagattg tttgggattg gaagtaaaga ttaaaaccaa aagaatttgt
3361 gtttgtctga taaaaaaaaa aaaaaaaaaa aa
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