LOCUS BC006514 1633 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens chromosome 1 open reading frame 43, mRNA (cDNA clone
MGC:2729 IMAGE:2822327), complete cds.
ACCESSION BC006514
VERSION BC006514.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1633)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1633)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (17-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 2 Row: d Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41281687.
FEATURES Location/Qualifiers
source 1..1633
/db_xref="H-InvDB:HIT000032890"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2729 IMAGE:2822327"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1633
/gene="C1orf43"
/gene_synonym="DKFZp586G1722"
/gene_synonym="HSPC012"
/gene_synonym="NICE-3"
/gene_synonym="S863-3"
/db_xref="GeneID:25912"
/db_xref="HGNC:HGNC:29876"
CDS 228..887
/gene="C1orf43"
/gene_synonym="DKFZp586G1722"
/gene_synonym="HSPC012"
/gene_synonym="NICE-3"
/gene_synonym="S863-3"
/codon_start=1
/product="chromosome 1 open reading frame 43"
/protein_id="AAH06514.1"
/db_xref="GeneID:25912"
/db_xref="HGNC:HGNC:29876"
/translation="MASGSNWLSGVNVVLVMAYGSLDLKEEIDIRLSRVQDIKYEPQL
LADDDARLLQLETQGNQSCYNYLYRMKALDAIRTSEIPFHSEGRHPRSLMGKNFRSYL
LDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFGQNEYLRYQEALSELATAVKARI
GSSQRHHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHFLELKSFKDNYNTLEST
L"
BASE COUNT 418 a 387 c 405 g 423 t
ORIGIN
1 ggccacgagg gtcacgtgtc agggggaagc tggaaggcgt cgttctcctt tcccagctct
61 cctgcctgtc cgccatgttt tcaggccggg tctggcttgg tcttcccccg taaggaaatg
121 gccggggagc tccaggggac ccaggcgccg tcgcttcggc ggagcctggg ctgaccagcc
181 aggacagcgg ggtaaacccg aacaattctg cgcgaggtag ggaggccatg gcgtccggca
241 gtaactggct ctccggggtg aatgtcgtgc tggtgatggc ctacgggagc ctggacttga
301 aagaggagat tgatattcga ctctccaggg ttcaggatat caagtatgag ccccagctcc
361 ttgcagatga tgatgctaga ctactacaac tggaaaccca gggaaatcaa agttgctaca
421 actatctgta taggatgaaa gctctggatg ccattcgtac ctctgagatc ccatttcatt
481 ctgaaggccg gcatccccgt tccttaatgg gcaagaattt ccgctcctac ctgctggatc
541 tgcgaaacac tagtacgcct ttcaagggtg tacgcaaagc actcattgat acccttttgg
601 atggctatga aacagcccgc tatgggacag gggtctttgg ccagaatgag tacctacgct
661 atcaggaggc cctgagtgag ctggccactg cggttaaagc acgaattggg agctctcagc
721 gacatcacca gtcagcagcc aaagacctaa ctcagtcccc tgaggtctcc ccaacaacca
781 tccaggtgac atacctcccc tccagtcaga agagtaaacg tgccaagcac ttccttgaat
841 tgaagagctt taaggataac tataacacat tggagagtac tctgtgacgg agctgaagga
901 ctcttgccgt agattaagcc agtcagttgc aatgtgcaag acaggctgct tgccgggccg
961 ccctcggaac atctggccca gcaggcccag actgtatcca tccaagttcc cgttgtatcc
1021 agagttctta gagcttgtgt ctaaagggta attccccaac ccttccttat gagcattttt
1081 agaacattgg ctaagactat tttcccccat tagcgctttt ttctggattt gcattcgggt
1141 gttattctta atgtttctgt caaagcttct taaaaatctt cacttggttt cagccatagt
1201 tcaccttccc tgttccaggt ttatttaatt ccaaaggtga gagttggagt gagatgtctt
1261 ccatatctat acctttgtgc acagttgaat gggaactgtt tgggtttagg gcatcttaga
1321 gttgattgat ggaaaaagca gacaggaact ggtgggaggt caagtgggga agttggtgaa
1381 tgtggaataa cttacctttg tgctccactt aaaccagatg tgttgcagct ttcctgacat
1441 gcaaggatct actttaattc cacactctca ttaataaatt gaataaaagg gaatgttttg
1501 gcacctgata taatctgcca ggctatgtga cagtaggaag gaatggtttc ccctaacaag
1561 cccaatgcac tggtctgact ttataaatta tttaataaaa tgaactatta tcaaataaaa
1621 aaaaaaaaaa aaa
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