LOCUS BC006511 3110 bp mRNA linear HUM 16-SEP-2003
DEFINITION Homo sapiens chromosome 14 open reading frame 43, mRNA (cDNA clone
IMAGE:3010441), partial cds.
ACCESSION BC006511
VERSION BC006511.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3110)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3110)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (17-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC006511.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 3 Row: l Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: GenomeScan gene
prediction.
FEATURES Location/Qualifiers
source 1..3110
/db_xref="H-InvDB:HIT000086683"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3010441"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..>3110
/gene="C14orf43"
/gene_synonym="c14_5541"
/db_xref="GeneID:91748"
CDS <1..>3110
/gene="C14orf43"
/gene_synonym="c14_5541"
/codon_start=2
/product="C14orf43 protein"
/protein_id="AAH06511.1"
/db_xref="GeneID:91748"
/translation="GSHRQGSVGHIMNLQAQPKAQNKRKRCLFGGQEPAPKEQPPPLQ
PPQQSIRVKEEQYLGHEGPGGAVSTSQPVELPPPSSLALLNSVVYGPERTSAAMLSQQ
VASVKWPNSVMAPGRGPERGGGGGVSDSSWQQQPGQPPPHSTWNCHSLSLYSATKGSP
HPGVGVPTYYNHPEALKREKAGGPQLDRYVRPMMPQKVQLEVGRPQAPLNSFHAAKKP
PNQSLPLQPFQLAFGHQVNRQVFRQGPPPPNPVAAFPPQKQQQQQQPQQQQQQQQAAL
PQMPLFENFYSMPQQPSQQPQDFGLQPAGPLGQSHLAHHSMAPYPFPPNPDMNPELRK
ALLQDSAPQPALPQVQIPFPRRSRRLSKEGILPPSALDGAGTQPGQEATGNLFLHHWP
LQQPPPGSLGQPHPEALGFPLELRESQLLPDGERLAPNGREREAPAMGSEEGMRAVST
GDCGQVLRGGVIQSTRRRRRASQEANLLTLAQKAVELASLQNAKDGSGSEEKRKSVLA
STTKCGVEFSEPSLATKRAREDSGMVPLIIPVSVPVRTVDPTEAAQAGGLDEDGKGPE
QNPAEHKPSVIVTRRRSTRIPGTDAQAQAEDMNVKLEGEPSVRKPKQRPRPEPLIIPT
KAGTFIAPPVYSNITPYQSHLRSPVRLADHPSERSFELPPYTPPPILSPVREGSGLYF
NAIISTSTIPAPPPITPKSAHRTLLRTNSAEVTPPVLSVMGEATPVSIEPRINVGSRF
QAEIPLMRDRALAAADPHKADLVWQPWEDLESSREKQRQVEDLLTAACSSIFPGAGTN
QELALHCLHESRGDILETLNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKLFNKGI
AIYKKDFFLVQKLIQTKTVAQCVEFYYTYKKQVKIGRNGTLTFGDVDTSDEKSAQEEV
EVDIKTSQKFPRVPLPRRESPSEERLEPKREVKEPRKEGEEEVPEIQEKEEQEEGRER
SRRAAAVKATQTLQANESASDILILRSHESNAPGSAGGQASEKPREGTGKSRRALPFS
EKKKKK"
misc_feature 2531..2662
/gene="C14orf43"
/gene_synonym="c14_5541"
/note="SANT; Region: SANT SWI3, ADA2, N-CoR and TFIIIB''
DNA-binding domains"
/db_xref="CDD:smart00717"
BASE COUNT 715 a 1004 c 914 g 477 t
ORIGIN
1 gggatctcac cgccagggct cagttggcca catcatgaac ctccaggccc agcccaaggc
61 tcagaacaag cggaagcgtt gcctcttcgg gggccaggaa ccagctccca aggagcagcc
121 ccctcccctg cagccccccc agcagtccat cagagtgaag gaggagcagt acctcgggca
181 cgagggtcca ggaggggcag tctccacctc tcagcctgtg gaactgcccc ctcctagcag
241 cctggccctg ctgaactctg tggtgtatgg gcctgagcgg acctcagcag ccatgctgtc
301 ccagcaggtg gcctcagtaa agtggcccaa ctctgtgatg gctccagggc ggggcccgga
361 gcgtggagga ggtgggggtg tcagtgacag cagctggcag cagcagccag gccagcctcc
421 accccattca acatggaact gccacagtct gtccctctac agtgcaacca aggggagccc
481 gcatcctgga gtgggagtcc cgacttacta taaccaccct gaggcactga agcgggagaa
541 agcggggggc ccacagctgg accgctatgt gcgaccaatg atgccacaga aggtgcagct
601 ggaggtaggg cggccccagg cacccctgaa ttctttccac gcagccaaga aacccccaaa
661 ccagtcactg cccctgcaac ccttccagct ggcattcggc caccaggtga accggcaggt
721 cttccggcag ggcccaccgc ccccaaaccc ggtggctgcc ttccctccac agaagcagca
781 gcagcagcag caaccacagc agcagcagca gcagcagcag gcagccctac cccagatgcc
841 gctctttgag aacttctatt ccatgccgca gcaaccctcg cagcaacccc aggactttgg
901 cctgcagcca gctgggccac tgggacagtc ccacctggct caccacagca tggcacccta
961 ccccttcccc cccaacccag atatgaaccc agaactgcgc aaggcccttc tgcaggactc
1021 agccccgcag ccagcgctac ctcaggtcca gatccccttc ccccgccgct cccgccgcct
1081 ctctaaggag ggtatcctgc ctcccagcgc cctggatggg gctggcaccc agcctgggca
1141 ggaggccact ggcaacctgt tcctacatca ctggcccctg cagcagccgc cacctggctc
1201 cctggggcag ccccatcctg aagctctggg attcccgctg gagctgaggg agtcgcagct
1261 actgcctgat ggggagagac tagcacccaa tggccgggag cgagaggctc ctgccatggg
1321 cagcgaggag ggcatgaggg cagtgagcac aggggactgt gggcaggtgc tacggggcgg
1381 agtgatccag agcacgcgac ggaggcgccg ggcatcccag gaggccaatt tgctgaccct
1441 ggcccagaag gctgtggagc tggcctcact gcagaatgca aaggatggca gtggttctga
1501 agagaagcgg aaaagtgtat tggcctcaac taccaagtgt ggggtggagt tttctgagcc
1561 ttccttagcc accaagcgag cacgagaaga cagtgggatg gtacccctca tcatcccagt
1621 gtctgtgcct gtgcgaactg tggacccaac tgaggcagcc caggctggag gtcttgatga
1681 ggacgggaag ggtcctgaac agaaccctgc tgagcacaag ccatcagtca tcgtcacccg
1741 caggcggtcc acccgaatcc ccgggacaga tgctcaagct caggcggagg acatgaatgt
1801 caagttggag ggggagcctt ccgtgcggaa accaaagcag cggcccaggc ccgagcccct
1861 catcatcccc accaaggcgg gcactttcat cgcccctccc gtctactcca acatcacccc
1921 ataccagagc cacctgcgct ctcccgtgcg cctagctgac cacccctctg agcggagctt
1981 tgagctacct ccctacacgc cgccccccat cctcagccct gtgcgggaag gctctggcct
2041 ctacttcaat gccatcatat caaccagcac catccctgcc cctcctccca tcacgcctaa
2101 gagtgcccat cgcacgctgc tccggactaa cagtgctgaa gtaaccccgc ctgtcctctc
2161 tgtgatgggg gaggccaccc cagtgagcat cgagccacgg atcaacgtgg gctcccggtt
2221 ccaggcagaa atccccttga tgagggaccg tgccctggca gctgcagatc cccacaaggc
2281 tgacttggtg tggcagccat gggaggacct agagagcagc cgggagaagc agaggcaagt
2341 ggaagacctg ctgacagccg cctgctccag cattttccct ggtgctggca ccaaccagga
2401 gctggccctg cactgtctgc acgaatccag aggagacatc ctggaaacgc tgaataagct
2461 gctgctgaag aagcccctgc ggccccacaa ccatccgctg gcaacttatc actacacagg
2521 ctctgaccag tggaagatgg ccgagaggaa gctgttcaac aaaggcattg ccatctacaa
2581 gaaggatttc ttcctggtgc agaagctgat ccagaccaag accgtggccc agtgcgtgga
2641 gttctactac acctacaaga agcaggtgaa aatcggccgc aatgggactc taacctttgg
2701 ggatgtggat acgagcgatg agaagtcggc ccaggaagag gttgaagtgg atattaagac
2761 ttcccaaaag ttcccaaggg tgcctcttcc cagaagagag tccccaagtg aagagaggct
2821 ggagcccaag agggaggtga aggagcccag gaaggagggg gaggaggagg tgccagagat
2881 ccaagagaag gaggagcagg aagaggggcg agagcgcagc aggcgggcag cggcagtcaa
2941 agccacgcag acactacagg ccaatgagtc ggccagtgac atcctcatcc tccggagcca
3001 cgagtccaac gcccctgggt ctgccggtgg ccaggcctcg gagaagccaa gggaagggac
3061 agggaagtca cgaagggcac tacctttttc agaaaaaaaa aaaaaaaaaa
//