LOCUS BC006473 2009 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens nipsnap homolog 1 (C. elegans), mRNA (cDNA clone
MGC:4049 IMAGE:2822369), complete cds.
ACCESSION BC006473
VERSION BC006473.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2009)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2009)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: b Column: 19.
FEATURES Location/Qualifiers
source 1..2009
/db_xref="H-InvDB:HIT000032858"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4049 IMAGE:2822369"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2009
/gene="NIPSNAP1"
/db_xref="GeneID:8508"
/db_xref="HGNC:HGNC:7827"
/db_xref="MIM:603249"
CDS 6..860
/gene="NIPSNAP1"
/codon_start=1
/product="nipsnap homolog 1 (C. elegans)"
/protein_id="AAH06473.1"
/db_xref="GeneID:8508"
/db_xref="HGNC:HGNC:7827"
/db_xref="MIM:603249"
/translation="MAPRLCSISVTARRLLGGPGPRAGDVASAAAARFYSKDNEGSWF
RSLFVHKVDPRKDAHSTLLSKKETSNLYKIQFHNVKPEYLDAYNSLTEAVLPKLHLDE
DYPCSLVGNWNTWYGEQDQAVHLWRFSGGYPALMDCMNKLKNNKEYLEFRRERSQMLL
SRRNQLLLEFSFWNEPQPRMGPNIYELRTYKLKPGTMIEWGNNWARAIKYRQENQEAV
GGFFSQIGELYVVHHLWAYKDLQSREETRNAAWRKRGWDENVYYTVPLVRHMESRIMI
PLKISPLQ"
BASE COUNT 510 a 529 c 529 g 441 t
ORIGIN
1 ccaacatggc tccgcggctg tgcagcatct ctgtgacggc gcggcggctg ctggggggcc
61 cggggcctcg cgctggggac gttgcgtctg cagctgcggc gcgtttctat tccaaggaca
121 atgaaggcag ctggttccgc tccctctttg ttcacaaagt ggatccccgg aaggatgccc
181 actccaccct gctgtccaag aaggaaacca gcaacctcta taagatccag tttcacaatg
241 taaagcctga atacctggat gcctacaaca gcctcacgga ggctgtgctg cccaagcttc
301 acctggatga ggactaccca tgctcactcg tgggcaactg gaacacgtgg tatggggagc
361 aggaccaggc agtgcacctg tggcgattct caggtggcta cccagccctc atggactgca
421 tgaacaagct caaaaacaat aaggagtacc tggagttccg aagggagcgg agccagatgc
481 tgctgtccag gagaaaccag ctgctcctcg agttcagctt ctggaatgag ccacagccca
541 gaatgggtcc caacatctat gagctgagga catacaagct caagccagga accatgatcg
601 agtgggggaa caactgggct cgggccatca agtaccggca ggagaaccag gaggcagtgg
661 gcggcttctt ctcacagata ggagagctct acgtggtgca ccatctctgg gcctataaag
721 acctgcagtc tcgggaggag actcgaaacg ctgcctggag gaagagaggc tgggatgaaa
781 atgtctacta tacagtcccc ctggtgcgac acatggagtc taggatcatg atccccttga
841 agatctcgcc tctgcagtga tgctgcctac acctccacct ccttcccctt ctccctcagg
901 caaccccgac agacagtggc actcctggtc ctgctgtctt ggttttgtct tggctctggg
961 aggactctga ggggcagtgc tcagttcaga caagggggaa ctgaaggctg acaagttctg
1021 aggattacag ctctgcccag gccctttcta ctttccctgc ctgcctccct ccccctgcta
1081 gaagtagttt ctgatttccc tgaatgaaag atagtgatct tttaggcctt catttatctt
1141 ctaaaattcc tcatctcaag gccaccagtc cccagttatc acccttggaa atcctctgtt
1201 tagcttagtt gcacaaaagg tagtatgtcc agtggctaga ggtggggtgg gaagagagga
1261 ggccaggcca ggccctcagg aattccctgg tttccactgg gccacccact tgctggacag
1321 tctgagccaa gtccctcctg ctggagaaaa gcctggaact gccaaaacaa aaaaacaaat
1381 acaaacaaac ctcgtcacca cggtcaggag gaggttcaga cattctgccc agaggggctg
1441 gggaaaggga tgggagccag gaaagattta ggggcaggag acagacacgt aacaggaact
1501 cggaaggtag aacttagaat tcagaacttg ggtttcaatt gtagaatttg gaatctggaa
1561 tacagaattg ggaagaagaa cagagatgac aaaagaccac ttgaagagag gttcctaata
1621 ctagacagat ggagagtggc ttggctgttt ccccctgcat attggggttg aaaacttaaa
1681 tgtgtagttc cagtccttct atgcagagtc tctcctgccc tccctccttc ctgcaggcaa
1741 atatacaagc tagaccctgt tccctcaccc tgtatcctgt ctcccctaat tgacattcta
1801 tcagcccaac cctcattctg cagggccacc tggtgtgtgg aggtggcggg aggggtcagt
1861 gactctgggg gtctcctcag tgacccccat acctcatcat gaacccttgg gtagcttgat
1921 tctgcctacc atccaggaaa acttgtgctg gaattgctga tggaaacaat taaatattta
1981 ctataaaaaa aaaaaaaaaa aaaaaaaaa
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