LOCUS BC006439 2336 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens protocadherin gamma subfamily C, 3, mRNA (cDNA clone
IMAGE:3010573), complete cds.
ACCESSION BC006439
VERSION BC006439.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2336)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2336)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 18 Row: b Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14277674
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2336
/db_xref="H-InvDB:HIT000032835"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3010573"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2336
/gene="PCDHGC3"
/gene_synonym="PC43"
/gene_synonym="PCDH-GAMMA-C3"
/db_xref="GeneID:5098"
/db_xref="HGNC:HGNC:8716"
/db_xref="MIM:603627"
CDS 116..520
/gene="PCDHGC3"
/gene_synonym="PC43"
/gene_synonym="PCDH-GAMMA-C3"
/codon_start=1
/product="protocadherin gamma subfamily C, 3"
/protein_id="AAH06439.1"
/db_xref="GeneID:5098"
/db_xref="HGNC:HGNC:8716"
/db_xref="MIM:603627"
/translation="MVPEAWRSGLQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ
FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS
NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK"
BASE COUNT 524 a 715 c 603 g 494 t
ORIGIN
1 cagaaagcca tgtcggactc ggcgcccagc gcccaagcgc taacccgctg aaagtttctc
61 agcgaaatct cagggacgat ctggaccccg ctgagaggaa ctgcttttga gtgagatggt
121 cccagaggcc tggaggagcg gactgcaagc cccgcccaac acggactggc gtttctctca
181 ggcccagaga cccggcacca gcggctccca aaatggcgat gacaccggca cctggcccaa
241 caaccagttt gacacagaga tgctgcaagc catgatcttg gcgtccgcca gtgaagctgc
301 tgatgggagc tccaccctgg gagggggtgc cggcaccatg ggattgagcg cccgctacgg
361 accccagttc accctgcagc acgtgcccga ctaccgccag aatgtctaca tcccaggcag
421 caatgccaca ctgaccaacg cagctggcaa gcgggatggc aaggccccag caggtggcaa
481 tggcaacaag aagaagtcgg gcaagaagga gaagaagtaa catggaggcc aggccaagag
541 ccacagggcg gcctctcccc aaccagccca gcttctcctt acctgcaccc aggcctcaga
601 gtttcagggc taacccccag aatactggta ggggccaagg ccatgctccc cttgggaaac
661 agaaacaagt gcccagtcag cacctacccc ttccccccca gggggttgaa tatgcaaaag
721 cagttccgct gggaaccccc atccaatcaa ctgctgtacc catgggggta gtggggttac
781 tgtagacacc aagaaccatt tgccacaccc cgtttagtta cagctgaact cctccatctt
841 ccaaatcaat caggcccatc catcccatgc ctccctcctc cccaccccac tccaacagtt
901 cctctttccc gagtaaggtg gttggggtgt tgaagtacca agtaacctac aagcctccta
961 gttctgaaaa gttggaaggg catcatgacc tcttggcctc tcctttgatt ctcaatcttc
1021 ccccaaagca tggtttggtg ccagcccctt cacctccttc cagagcccaa gatcaatgct
1081 caagttttgg aggacatgat caccatcccc atggtactga tgcttgctgg atttagggag
1141 ggcattttgc taccaagcct cttcccaacg ccctggggac cagtcttctg ttttgttttt
1201 cattgtttga cgtttccact gcatgccttg acttccccca cctcctcctc aaacaagaga
1261 ctccactgca tgttccaaga cagtatgggg tggtaagata aggaagggaa gtgtgtggat
1321 gtggatggtg ggggcatgga caaagcttga cacatcaagt tatcaaggcc ttggaggagg
1381 ctctgtatgt cctcagggga ctgacaacat cctccagatt ccagccataa accaataact
1441 aggctggacc cttcccacta cataataggg ctcagcccag gcagccagct ttgggctgag
1501 ctaacaggac caatggatta aactggcatt tcagtccaag gaagctcgaa gcaggtttag
1561 gaccaggtcc ccttgagagg tcagaggggc ctctgtgggt gctgggtact ccagaggtgc
1621 cactggtgga agggtcagcg gagccccagc aggaagggtg ggccagccag gccattctta
1681 gtccctgggt tggggaggca gggagctagg gcagggacca aatgaacaga aagtctcagc
1741 ccaggatggg gcttcttcaa cagggcccct gccctcctga agcctcagtc cttcaccttg
1801 ccaggtgccg tttctcttcc gtgaaggcca ctgcccaggt ccccagtgcg ccccctagtg
1861 gccatagcct ggttaaagtt ccccagtgcc tccttgtgca tagaccttct tctcccaccc
1921 ccttctgccc ctgggtcccc ggccatccag cggggctgcc agagaacccc agacctgccc
1981 ttacagtagt gtagcgcccc ctccctcttt cggctggtgt agaatagcca gtagtgtagt
2041 gcggtgtgct tttacgtgat ggcgggtggg cagcgggcgg cgggctccgc gcagccgtct
2101 gtccttgatc tgcccgcggc ggcccgtgtt gtgttttgtg ctgtgtccac gcgctaaggc
2161 gaccccctcc cccgtactga cttctcctat aagcgcttct cttcgcatag tcacgtagct
2221 cccaccccac cctcttcctg tgtctcacgc aagttttata ctctaatatt tatatggctt
2281 tttttcttcg acaaaaaaat aataaaacgt ttcttctgaa aaaaaaaaaa aaaaaa
//