LOCUS BC006417 1883 bp mRNA linear HUM 27-APR-2005
DEFINITION Homo sapiens 5'-3' exoribonuclease 2, mRNA (cDNA clone
IMAGE:3545839), partial cds.
ACCESSION BC006417
VERSION BC006417.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1883)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1883)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 18 Row: f Column: 14.
FEATURES Location/Qualifiers
source 1..1883
/db_xref="H-InvDB:HIT000032820"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3545839"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_15"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1883
/gene="XRN2"
/db_xref="GeneID:22803"
/db_xref="MIM:608851"
CDS <1..1743
/gene="XRN2"
/codon_start=1
/product="XRN2 protein"
/protein_id="AAH06417.2"
/db_xref="GeneID:22803"
/db_xref="MIM:608851"
/translation="VHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSF
RRRQKEKRKRMKRDQPAFTPSGILTPHALGSRNSPGSQVASNPRQAAYEMRMQNNSSP
SISPNTSFTSDGSPSPLGGIKRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAA
DEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKG
TKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQG
VALLPFVDERRLRAALEEVYPDLTPEETRRNSLGGDVLFVGKHHPLHDFILELYQTGS
TEPVEVPPELCHGIQGKFSLDEEAILPDQIVCSPVPMLRDLTQNTVVSINFKDPQFAE
DYIFKAVMLPGARKPAAVLKPSDWEKSSNGRQWKPQLGFNRDRRPVHLDQAAFRTLGH
VMPRGSGTGIYSNAAPPPVTYQGNLYRPLLRGQAQIPKLMSNMRPQDSWRGPPPLFQQ
QRFDRGVGAEPLLPWNRMLQTQNAAFQPNQYQMLAGPGGYPPRRDDRGGRQGYPREGR
KYPLPPPSGRYNWN"
BASE COUNT 574 a 387 c 447 g 475 t
ORIGIN
1 gtacacaaaa ctgggggtta ccttacagaa agtggttatg tcaatctgca aagagtacag
61 atgatcatgt tagcagttgg tgaagttgag gatagcattt ttaaaaagag aaaggatgat
121 gaggacagtt ttagaagacg acagaaagaa aaaagaaaga gaatgaagag agatcaacca
181 gctttcactc ctagtggaat attaactcct catgccttgg gttcaagaaa ttcaccaggt
241 tctcaagtag ccagtaatcc gagacaagca gcctatgaaa tgaggatgca gaataactct
301 agtccttcga tatctcctaa tacgagtttc acatctgatg gctccccgtc tccattagga
361 ggaattaagc gaaaagcaga agacagtgac agtgaacctg agccagagga taatgtcagg
421 ttatgggaag ctggctggaa gcagcggtac tacaagaaca aatttgatgt ggatgcagct
481 gatgagaaat tccgtcggaa agttgtgcag tcgtacgttg aaggactttg ctgggttctt
541 agatattatt accagggctg tgcttcctgg aagtggtatt atccatttca ttatgcacca
601 tttgcttcag actttgaagg cattgcagac atgccatctg attttgagaa gggtacgaaa
661 ccgtttaaac cactagaaca acttatgggg gtatttccag ctgcaagtgg taattttcta
721 cctccatcat ggcggaagct catgagtgat cctgattcta gtataattga cttctatcct
781 gaagattttg ctattgattt gaatgggaag aaatatgcat ggcaaggtgt tgctctcttg
841 ccattcgtgg atgagcgaag gctacgagct gccctagaag aggtataccc agacctcact
901 ccagaagaga ccagaagaaa cagccttgga ggtgatgtct tatttgtggg gaaacatcac
961 ccactccatg acttcatttt agagctgtac cagacaggtt ccacagagcc agtggaggta
1021 ccccctgaac tatgtcatgg gattcaagga aagttttctt tggatgaaga agccattctt
1081 ccagatcaaa tagtatgttc tcctgttcct atgttaaggg atctgacaca gaacactgta
1141 gtcagtatta attttaaaga cccacagttt gctgaagatt acatttttaa agctgtaatg
1201 cttccaggag caagaaagcc agcagcagta ctgaaaccta gtgactggga aaaatccagc
1261 aatggacggc agtggaagcc tcagcttggc tttaaccgtg accggaggcc tgtgcacctg
1321 gatcaggcag ccttcaggac tttgggccat gtgatgccaa gaggctcagg aactggcatt
1381 tacagcaatg ctgcaccacc acctgtgact taccagggaa acttatacag gccgcttttg
1441 agaggacaag cccagattcc aaaacttatg tcaaatatga ggccccagga ttcctggcga
1501 ggtcctcctc cccttttcca gcagcaaagg tttgacagag gcgttggggc tgaacctctg
1561 ctcccatgga accggatgct gcaaacccag aatgcagcct tccagccaaa ccagtaccag
1621 atgctagctg ggcctggtgg gtatccaccc agacgagatg atcgtggagg gagacaggga
1681 tatcccagag aaggaaggaa ataccctttg ccaccaccct caggaagata caattggaat
1741 taagcttttg taaagctttc ccaaatcctt tcatcattct acagttttat gctatttgtg
1801 gaaagatttc tttctcaagt agtagttttt aataaaacta cagtactttg tgtaaaaaaa
1861 aaaaaaaaaa aaaaaaaaaa aaa
//