LOCUS BC006400 1938 bp mRNA linear HUM 06-OCT-2006
DEFINITION Homo sapiens raftlin, lipid raft linker 1, mRNA (cDNA clone
IMAGE:4309033), partial cds.
ACCESSION BC006400
VERSION BC006400.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1938)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1938)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC006400.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis Staudt
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 17 Row: p Column: 7.
FEATURES Location/Qualifiers
source 1..1938
/db_xref="H-InvDB:HIT000086654"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4309033"
/tissue_type="Primary B-Cells from Tonsils"
/clone_lib="NIH_MGC_48"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1938
/gene="RFTN1"
/gene_synonym="FLJ23866"
/gene_synonym="KIAA0084"
/gene_synonym="MIG2"
/gene_synonym="PIB10"
/gene_synonym="PIG9"
/gene_synonym="RAFTLIN"
/db_xref="GeneID:23180"
/db_xref="HGNC:HGNC:30278"
CDS <1..947
/gene="RFTN1"
/gene_synonym="FLJ23866"
/gene_synonym="KIAA0084"
/gene_synonym="MIG2"
/gene_synonym="PIB10"
/gene_synonym="PIG9"
/gene_synonym="RAFTLIN"
/codon_start=3
/product="RFTN1 protein"
/protein_id="AAH06400.4"
/db_xref="GeneID:23180"
/db_xref="HGNC:HGNC:30278"
/translation="PLEVHEEPLSGKMEIFTLFNKPKSHQKCRQYYPVTIPLHVSKNG
QTVSGLDANWLEHMSDHFRKGGMLVNAVFYLGIVNDSLHGLTDGVFIFEAVSTEDSKT
IQGYDAIVVEQWTVLEGVEVQTDYVPLLNSLAAYGWQLTCVLPTPVVKTTSEGSISTK
QIVFLQRPCLPQKIKKKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAEENEKNLE
DQSSKAGDMGNCVSGQQQEGGVSEEMKGPVQEDKGEQLSPGGLLCGVGVEGEAVQNGP
ASHSRALVGICTGHSNPGEDARDGDAEEVRELGTVEEN"
BASE COUNT 507 a 457 c 503 g 471 t
ORIGIN
1 accccttgga ggtgcatgaa gagccactct cagggaaaat ggagatcttc acccttttca
61 acaaaccgaa gagccatcag aagtgccggc aatactaccc tgtcaccatt cctctccatg
121 tctccaagaa tggccagaca gtgagcggtt tggacgccaa ctggttagag cacatgagcg
181 accacttccg gaaaggaggc atgctggtga acgcagtctt ctaccttgga atagtgaatg
241 attccttaca tggcttgaca gatggagtat tcatctttga agctgtttcc acagaagata
301 gcaaaaccat acagggctat gatgctattg tggttgaaca atggacagtc ctggaaggtg
361 tcgaagtgca gacagactac gtgcccctgc tgaactcgct ggcggcctat ggctggcagc
421 tcacctgtgt gctaccaact cccgtcgtca agactaccag cgaggggagt atatccacca
481 agcagattgt ctttcttcag agaccgtgtc tacctcagaa aatcaagaag aaggaatcga
541 agtttcagtg gcgattctcc agagaagaaa tgcacaacag gcagatgagg aaatcaaaag
601 gtaaactcag tgccagagac aaacaacaag cagaagaaaa tgagaagaac ttagaagacc
661 agtcttccaa agctggagac atgggaaact gtgtttcggg acagcagcag gagggtggag
721 tctccgagga gatgaagggc cctgtccaag aggacaaggg agaacagctg tcccctggtg
781 gcctgctgtg tggggtgggt gtggagggtg aggctgtgca gaatggtcct gccagccaca
841 gcagggccct ggtggggatt tgcactgggc actccaatcc tggagaggat gccagggacg
901 gggatgctga ggaagtcaga gagcttggta cggttgaaga aaactgagtc ttgggcaatt
961 tgtgctaaaa ctaggtgagt tgccaaaccc aaggcatctt accaacagct ggtttggggg
1021 ctggtttccc tggtgttgtg tgttacctac cctttggctt ggcttgacct ctccttgtga
1081 gctcacctga gccctcccag ggccaggttc ctgacagtgt tggtttttgc acatccactg
1141 gaaaggtgtc attaatgacc cagtgttaga atgcaagagg tcaggttatt ctagccctca
1201 tggctgaagg cccagtcctg gctccaccac tcctccagcc agagggtctg gaccatccag
1261 tgcctgtcct cgccacaggg cctccaggga gcattcgggt caaatccatg gacaccctgg
1321 gctacaaacc aaggctgctg ttcatcccac atcgtgtggg gcagtgtcca tcccctgcag
1381 ctacttggtg acttaacaac tccaggagcc ctgtcagctg ccctcctcca cctaaacccc
1441 ttcgactctt ctgctttgac aaagaaaatg acattgggga ggggaggtgc tccgcctccc
1501 agcttttctc aaaatagtcc tatagatact ggtaatctgg aaatgaagaa gtaattctgt
1561 ctctgcacct acttttgcag aatgttcaag gaagtattct gtgttagtat taatgccaaa
1621 aagttgtttt taaaggtttt gtactcagca catcatacaa accacattac ttctgtcact
1681 tcagggcatc gggactggct ggcgcccttg ttatgtgcta ttttaatcag tgtaacattg
1741 gtcaagttgt tacccatgta tgctgtgttt atcatgtgta tatcgtctag aaagtattaa
1801 ggctttaggt agatgcaact ggcgaacctt ggagagggaa tgctgattgt cttgaccaaa
1861 cccacagcct gtctcttctc ttgtttagtt acttacggca ataaatcatc tatgagttag
1921 aaaaaaaaaa aaaaaaaa
//