LOCUS BC006371 1196 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens SH3 domain binding glutamic acid-rich protein, mRNA
(cDNA clone MGC:12640 IMAGE:4138452), complete cds.
ACCESSION BC006371
VERSION BC006371.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1196)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1196)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC006371.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 17 Row: k Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 48762711.
FEATURES Location/Qualifiers
source 1..1196
/db_xref="H-InvDB:HIT000032790"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12640 IMAGE:4138452"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1196
/gene="SH3BGR"
/gene_synonym="21-GARP"
/db_xref="GeneID:6450"
/db_xref="HGNC:HGNC:10822"
/db_xref="MIM:602230"
CDS 6..725
/gene="SH3BGR"
/gene_synonym="21-GARP"
/codon_start=1
/product="SH3 domain binding glutamic acid-rich protein"
/protein_id="AAH06371.1"
/db_xref="GeneID:6450"
/db_xref="HGNC:HGNC:10822"
/db_xref="MIM:602230"
/translation="MPLLLLGETEPLKLERDCRSPVEPWAAASPDLALACLCHCQDLS
SGAFPNRGVLGGVLFPTVEMVIKVFVATSSGSIAIRKKQQEVVGFLEANKIDFKELDI
AGDEDNRRWMRENVPGEKKPQNGIPLPPQIFNEEQYCGDFDSFFSAKEENIIYSFLGL
APPPDSKGSEKAEEGGETEAQKEGSEDVGNLPEAQEKNEEEGETATEETEEIAMEGAE
GEAEEEEETAEGEEPGEDEDS"
BASE COUNT 373 a 232 c 294 g 297 t
ORIGIN
1 ccaagatgcc tctgctgctc cttggagaga cagagcctct taagttggag cgggactgcc
61 ggagcccagt ggagccctgg gctgctgcca gccccgacct ggcacttgct tgcctgtgtc
121 actgtcagga tttgtctagc ggcgcattcc ctaacagggg tgtgttgggg ggagtcctct
181 ttccaactgt cgaaatggtt atcaaagtgt ttgttgctac atcttctggg tccatagcga
241 ttaggaagaa acagcaagaa gtagtgggtt ttttggaagc gaataaaatc gactttaagg
301 aattagatat tgctggagat gaagacaaca ggaggtggat gagagagaat gttcctggag
361 agaaaaaacc tcaaaatggg attcctttgc ctccccagat cttcaatgag gagcagtact
421 gtggggattt tgactctttc ttctctgcaa aagaagagaa tattatttat tccttccttg
481 gtttggctcc tcctccagac tcaaagggat cagagaaggc tgaagaaggt ggagaaactg
541 aggcacaaaa agagggcagt gaagatgtgg gcaacctccc tgaagcccag gagaagaatg
601 aagaagaagg agagacagcc acagaagaga cggaagaaat agccatggag ggtgcggaag
661 gggaagccga ggaggaggaa gaaactgcag aaggagaaga gcctggagaa gacgaagatt
721 cctaggcctt ttcatgcttc atttcttcca cttctccaga aaatggaagc tatgaagcaa
781 catttcaaat gtctctccac aaaccaaact caacagaata ctttggcttg aagccggcac
841 acccagggtt actgaggact tatgctgcct gacctggtta gatgtacatg gaggtatctc
901 ccgaatcata caaaattaaa tgtgaagacc gtttatgcat accttcatgt gcctgacagt
961 cttggctttt gaagattttt tttctttttt gctctgcata gctagaccat cttattaata
1021 atactctgaa aaaaatgatt tcaaggcatg gaagttctct gtgatacaac aatagtattt
1081 cttcaaatgc gccttatgct acttatctca gaaacaggtt ttaaaatgaa gtgctttcca
1141 gagaaccatc atataaataa agattaatag aaaaaaaaaa aaaaaaaaaa aaaaaa
//