LOCUS BC006346 1297 bp mRNA linear HUM 08-SEP-2006
DEFINITION Homo sapiens SPEG complex locus, mRNA (cDNA clone IMAGE:4100987),
complete cds.
ACCESSION BC006346
VERSION BC006346.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1297)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1297)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC006346.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 17 Row: c Column: 8
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1297
/db_xref="H-InvDB:HIT000032773"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4100987"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1297
/gene="SPEG"
/gene_synonym="BPEG"
/gene_synonym="KIAA1297"
/gene_synonym="MGC12676"
/gene_synonym="SPEGalpha"
/gene_synonym="SPEGbeta"
/db_xref="GeneID:10290"
/db_xref="HGNC:HGNC:16901"
CDS 135..476
/gene="SPEG"
/gene_synonym="BPEG"
/gene_synonym="KIAA1297"
/gene_synonym="MGC12676"
/gene_synonym="SPEGalpha"
/gene_synonym="SPEGbeta"
/codon_start=1
/product="SPEG protein"
/protein_id="AAH06346.1"
/db_xref="GeneID:10290"
/db_xref="HGNC:HGNC:16901"
/translation="MKPSPSQNRRSSDTGSKAPPTFKVSLMDQSVREGQDVIMSIRVQ
GEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGAR
QCEARLEVRGE"
BASE COUNT 271 a 385 c 399 g 242 t
ORIGIN
1 ccgaggtcgg gatgtgactt gtctgcggtg ggtctacatc ccctttcagc agccccatca
61 cctccgacga ggaatacctg agccccccag aggagttccc agagcctggg gagacctggc
121 cgcgaacccc caccatgaag cccagtccca gccagaaccg ccgttcttct gacactggct
181 ccaaggcacc ccccaccttc aaggtctcac ttatggacca gtcagtaaga gaaggccaag
241 atgtcatcat gagcatccgc gtgcaggggg agcccaagcc tgtggtctcc tggctgagaa
301 accgccagcc cgtgcgccca gaccagcggc gctttgcgga ggaggctgag ggtgggctgt
361 gccggctgcg gatcctggct gcagagcgtg gcgatgctgg tttctacact tgcaaagcgg
421 tcaatgagta tggtgctcgg cagtgcgagg cccgcttgga ggtccgaggc gagtgagctc
481 agggggccac ctgcgctccc cccgctaccc tccgagccgc gcccctgtct caggcacctc
541 tcggacctcg ctgtgtttca ctgcctcctg cccacagacc caggcctgcc ggcccggacc
601 cgtcccagcc tcccctcccc accccatgca gcccccaggg ggatagccca tgggcccctg
661 tggaccctcc ctccccaagt ggacacatgg ctgtgcaggc caggaggccc acagatggac
721 tgagtgctgg gaaggggcgg ctgcgagggg tatcaacccc ccgagtctct ccctgaaggg
781 gagcaccggg cgagtgcatg tgctactgct gctacaggcc tgtctatctg tttgtctgtc
841 tgtgtgtctg tgacagtcag ggaaggatgc ctcggagctg aggtggggtg agacagagtg
901 ggagagatta cggcatggca tggaggggcc caaggagcag gggctgttga caaaggcctt
961 accaggaagg gttaggacac tgaccattct agaaatgggt ttcgaatggc acaacacttt
1021 ctatttcaca aaagaccaaa agccagaggc cccaggctct gtgctgatga acagcctggc
1081 tgagccctgg ccctggcagg tttagggccc atttggggcc ccctccttct ctgtcagggc
1141 tggggtgctc tgtctgggaa tgagggagtt aaccaagttt ggtgcaggag caggggcagg
1201 gggccactgt agtgagcgtg gagaaatttg gaaacaccta tttcttaact caaataaagt
1261 ccagtttgta cctaaaaaaa aaaaaaaaaa aaaaaaa
//