LOCUS BC006345 1985 bp mRNA linear HUM 11-DEC-2003
DEFINITION Homo sapiens lysosomal-associated membrane protein 1, mRNA (cDNA
clone IMAGE:4100802), partial cds.
ACCESSION BC006345
VERSION BC006345.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1985)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1985)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (09-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC006345.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 17 Row: c Column: 6.
FEATURES Location/Qualifiers
source 1..1985
/db_xref="H-InvDB:HIT000086641"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4100802"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1985
/gene="LAMP1"
/gene_synonym="CD107a"
/gene_synonym="LAMPA"
/gene_synonym="LGP120"
/db_xref="GeneID:3916"
/db_xref="MIM:153330"
CDS <1..929
/gene="LAMP1"
/gene_synonym="CD107a"
/gene_synonym="LAMPA"
/gene_synonym="LGP120"
/codon_start=3
/product="LAMP1 protein"
/protein_id="AAH06345.2"
/db_xref="GeneID:3916"
/db_xref="MIM:153330"
/translation="RYSVQLMSFVYNLSDTHLFPNASSKEIKTVESITDIRADIDKKY
RCVSGTQVHMNNVTVTLHDATIQAYLSNSSFSRGETRCEQDRPSPTTAPPAPPSPSPS
PVPKSPSVDKYNVSGTNGTCLLASMGLQLNLTYERKDNTTVTRLLNINPNKTSASGSC
GAHLVTLELHSEGTTVLLFQFGMNASSSRFFLQGIQLNTILPDARDPAFKAANGSLRA
LQATVGNSYKCNAEEHVRVTKAFSVNIFKVWVQAFKVEGGQFGSVEECLLDENSMLIP
IAVGGALAGLVLIVLIAYLVGRKRSHAGYQTI"
misc_feature 3..926
/gene="LAMP1"
/gene_synonym="CD107a"
/gene_synonym="LAMPA"
/gene_synonym="LGP120"
/note="Lamp; Region: Lysosome-associated membrane
glycoprotein (Lamp)"
/db_xref="CDD:pfam01299"
BASE COUNT 469 a 490 c 547 g 479 t
ORIGIN
1 cacgttacag cgtccagctc atgagttttg tttataactt gtcagacaca caccttttcc
61 ccaatgcgag ctccaaagaa atcaagactg tggaatctat aactgacatc agggcagata
121 tagataaaaa atacagatgt gttagtggca cccaggtcca catgaacaac gtgaccgtaa
181 cgctccatga tgccaccatc caggcgtacc tttccaacag cagcttcagc aggggagaga
241 cacgctgtga acaagacagg ccttccccaa ccacagcgcc ccctgcgcca cccagcccct
301 cgccctcacc cgtgcccaag agcccctctg tggacaagta caacgtgagc ggcaccaacg
361 ggacctgcct gctggccagc atggggctgc agctgaacct cacctatgag aggaaggaca
421 acacgacggt gacaaggctt ctcaacatca accccaacaa gacctcggcc agcgggagct
481 gcggcgccca cctggtgact ctggagctgc acagcgaggg caccaccgtc ctgctcttcc
541 agttcgggat gaatgcaagt tctagccggt ttttcctaca aggaatccag ttgaatacaa
601 ttcttcctga cgccagagac cctgccttta aagctgccaa cggctccctg cgagcgctgc
661 aggccacagt cggcaattcc tacaagtgca acgcggagga gcacgtccgt gtcacgaagg
721 cgttttcagt caatatattc aaagtgtggg tccaggcttt caaggtggaa ggtggccagt
781 ttggctctgt ggaggagtgt ctgctggacg agaacagcat gctgatcccc atcgctgtgg
841 gtggtgccct ggcggggctg gtcctcatcg tcctcatcgc ctacctcgtc ggcaggaaga
901 ggagtcacgc aggctaccag actatctagc ctggtgcacg caggcacagc agctgcaggg
961 gcctctgttc ctttctctgg gcttagggtc ctgtcgaagg ggaggcacac tttctggcaa
1021 acgtttctca aatctgcttc atccaatgtg aagttcatct tgcagcattt actatgcaca
1081 acagagtaac tatcgaaatg acggtgttaa ttttgctaac tgggttaaat attttgctaa
1141 ctggttaaac attaatattt accaaagtag gattttgagg gtgggggtgc tctctctgag
1201 ggggtggggg tgccgctgtc tctgaggggt gggggtgccg ctgtctctga ggggtggggg
1261 tgccgctctc tctgaggggg tgggggtgcc gctctctctg agggggtggg ggtgccgctc
1321 tctctgaggg ggtgggggtg ctgctctctc cgaggggtgg aatgccgctg tctctgaggg
1381 gtgggggtgc cgctctaaat tggctccata tcatttgagt ttagggttct ggtgtttggt
1441 ttcttcattc tttactgcac tcagatttaa gccttacaaa gggaaagcct ctggccgtca
1501 cacgtaggac gcatgaaggt cactcgtggt gaggctgaca tgctcacaca ttacaacagt
1561 agagagggaa aatcctaaga cagaggaact ccagagatga gtgtctggag cgcttcagtt
1621 cagctttaaa ggccaggacg ggccacacgt ggctggcggc ctcgttccag tggcggcacg
1681 tccttgggcg tctctaatgt ctgcagctca agggctggca cttttttaaa tataaaaatg
1741 ggtgttattt ttattttttt ttgtaaagtg atttttggtc ttctgttgac attcggggtg
1801 atcctgttct gcgctgtgta caatgtgaga tcggtgcgtt ctcctgatgt tttgccgtgg
1861 cttggggatt gtacacggga ccagctcacg taatgcattg cctgtaacaa tgtaataaaa
1921 agcctctttc tttttaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1981 aaaaa
//