LOCUS BC006340 1681 bp mRNA linear HUM 09-DEC-2005
DEFINITION Homo sapiens zinc finger, CCHC domain containing 2, mRNA (cDNA
clone IMAGE:4079754), complete cds.
ACCESSION BC006340
VERSION BC006340.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1681)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1681)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 17 Row: a Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, GenomeScan gene prediction
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1681
/db_xref="H-InvDB:HIT000032770"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4079754"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_46"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1681
/gene="ZCCHC2"
/gene_synonym="DKFZp451A185"
/gene_synonym="FLJ20281"
/gene_synonym="KIAA1744"
/gene_synonym="MGC13269"
/db_xref="GeneID:54877"
/db_xref="HGNC:HGNC:22916"
/db_xref="IMGT/GENE-DB:22916"
/db_xref="MIM:22916"
CDS 51..1139
/gene="ZCCHC2"
/gene_synonym="DKFZp451A185"
/gene_synonym="FLJ20281"
/gene_synonym="KIAA1744"
/gene_synonym="MGC13269"
/codon_start=1
/product="ZCCHC2 protein"
/protein_id="AAH06340.1"
/db_xref="GeneID:54877"
/db_xref="HGNC:HGNC:22916"
/db_xref="IMGT/GENE-DB:22916"
/db_xref="MIM:22916"
/translation="MPGGGGGPSAALREQERVYEWFGLVLGSAQRLEFMCGLLDLCNP
LELRFLGSCLEDLARKDYHYLRDSEAKANGLSDPGPLADFREPAVRSRLIVYLALLGS
ENREAAGRLHRLLPQVDSVLKSLRAARGEGSRGGAEDERGEDGDGEQDAEKDGSGPEG
GIVEPRVGGGLGSRAQEELLLLFTMASLHPAFSFHQRVTLREHLERLRAALRGGPEDA
EVEVEPCKFAGPRAQVRRTEPPWTRGAIAAPAASPASLSDAPCPSPSPAQVARNPHPA
APSARGLSFVSLGRSVPLPHPTPHPGRHSHPPSQNALEVPSVPRCCHGRRGAPRPGPL
SEEKCRDVFGSEHLSARCGSRGALEEPV"
BASE COUNT 270 a 541 c 577 g 293 t
ORIGIN
1 acgagggact cgggccgcct gttgctggtg gagcggcggc gggggcgggt atgccgggcg
61 gcggcggggg gccctcggcg gcgctgcgcg agcaggagcg ggtatacgag tggttcgggc
121 tggtgctggg ctcggcgcag cgcctggagt tcatgtgcgg gctgctggac ctgtgcaacc
181 cgctggagct gcgcttcctt ggctcgtgcc tggaggacct ggcgcgcaag gactaccact
241 acctgcgcga ctcggaggcc aaggccaacg gcctctcgga cccggggccg ctggccgact
301 tccgagagcc cgcggtgcgc tcgcgcctca tcgtctacct ggcgctgctg ggctcggaga
361 accgggaggc cgctggccgt ctgcaccgcc tgctacccca ggtggactcg gtgctcaaaa
421 gcctgcgcgc ggcccggggc gagggctcgc ggggcggcgc ggaggacgag cgcggcgagg
481 acggcgacgg cgagcaggac gccgagaagg acggctcagg cccggaaggc ggcattgtgg
541 agccccgggt cggcggcggg cttggctcca gggcccagga ggaactgctg ctgctcttca
601 ccatggcctc gctgcacccg gctttctcct tccaccagcg ggtcaccctg agggaacact
661 tggagaggct ccgcgccgcg ctccgcgggg gccccgagga cgcggaggtg gaggtagagc
721 cgtgcaagtt tgccggcccc agggcccagg taaggcgcac ggagcctccc tggactcgcg
781 gtgcgatcgc tgccccggcg gcctccccgg cctcgctctc ggacgcccct tgcccgagcc
841 ccagcccggc gcaggtggct cggaatcccc acccggcagc tcccagcgcc agagggctga
901 gcttcgtctc gctgggccgc tccgttccac tcccccaccc caccccacac cccggcagac
961 acagccaccc gccatcacag aatgctctag aagtcccttc cgtgccacgg tgttgccacg
1021 gaagacgtgg agctccccgc ccggggcccc tctcggagga aaagtgtcgg gacgtttttg
1081 gctctgagca tctcagcgct cggtgcggga gccgcggggc gctggaggaa cctgtgtgag
1141 agccagccgc agtgagcccc aggcagcgcc gtccttcccc gcctgcctgg ccggggctcc
1201 gcctcccgtc tccgggctct gccgggccct cggcggggtg tcctgaaggt gcgctcccgg
1261 cgagctgccc ttgtctttgg cacagaggga ctttttttgc ccagtgtgtg cctgagttaa
1321 aaggggtcgt acgggtcctt gtggcttctg ctctgagggc ttgtgttccc agcagacatc
1381 tgacgtagag acctgcgaat ggatctgaga tgagtagtaa cgcaggttgt ccggggagag
1441 aaaccttttc tagcgcggcc tgggatgctt tttccctccg gcacacgcgc tttctcacgg
1501 gcttgattcc tgcctacaga ttggggttcc gggatatttg ttgagcgttt acgataggcg
1561 ttaatgttgc ccaaaagaat cacttaaaca ccaaaatgta gtagacgaga atccagatga
1621 gacacttgtc gcaaacatta aagatgaatt ttttttacag ccaaaaaaaa aaaaaaaaaa
1681 a
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