LOCUS BC006276 879 bp mRNA linear HUM 26-APR-2004
DEFINITION Homo sapiens apolipoprotein L, 4, mRNA (cDNA clone IMAGE:3956995),
complete cds.
ACCESSION BC006276
VERSION BC006276.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 879)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 879)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (09-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC006276.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 15 Row: b Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22035655
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..879
/db_xref="H-InvDB:HIT000032719"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3956995"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..879
/gene="APOL4"
/gene_synonym="APOL-IV"
/gene_synonym="APOLIV"
/db_xref="GeneID:80832"
/db_xref="MIM:607254"
CDS 334..657
/gene="APOL4"
/gene_synonym="APOL-IV"
/gene_synonym="APOLIV"
/codon_start=1
/product="APOL4 protein"
/protein_id="AAH06276.1"
/db_xref="GeneID:80832"
/db_xref="MIM:607254"
/translation="MGSWVQLITSVGTSGLFLGVRVREEGAGMRCSKTIQAGQWLDSS
KGPLGPSPPPVPTAGYSSSFCVHYVNLLPGVLVLSVTSQYPHLSMALCQLAAHDWPRL
SCVCV"
BASE COUNT 218 a 212 c 229 g 220 t
ORIGIN
1 atcttggggg ctggaggacg tgtctggtta ttatataggt gcacagctgg aggtgagatc
61 cacacagctc agaccagctg gatcttgctc agtctctgtc agaggaagat cccttggagg
121 aggccccgca gcgacatgga gggagctgct ttgctgaaaa tctttgtcgt ctgcatctgg
181 aaccaaaatc acttcccgga attgaccaac tggtagactc gcctagaggg gacgcactgt
241 gtcctagttg aggctaacag tcagtatcca gcctcaacat tcagcagagg ccccagatca
301 gcgtctgagc caggccaaca atgaccaagg aggatgggat cctgggtgca gctcatcaca
361 agcgtcggga caagcggact tttccttggt gtgagagtga gggaagaggg agctggaatg
421 aggtgcagca aaaccatcca ggctggacag tggctggaca gttccaaggg tcctctgggc
481 ccatcccctc cccctgtccc tacagctggt tacagcagct ccttctgtgt ccattatgtg
541 aacctgctgc ctggagttct tgttctttct gtgacctccc agtatccaca tctcagcatg
601 gccctctgtc agctggctgc tcatgactgg ccgaggttaa gctgtgtttg tgtctgacag
661 aagcgcccat ctgatatgac cccagttcag attcatagct tgcagtttca tggggggtta
721 cagctgttct gaaggtctgg ttggttttgt ttgcccggga atgtttcagg tctggttttt
781 attttaattt tgctttaata ttcaccatcc ccaccccatc aataaaacac aaatttagtg
841 ctggaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
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