LOCUS BC006273 1576 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens nuclear factor of kappa light polypeptide gene
enhancer in B-cells inhibitor, delta, mRNA (cDNA clone
IMAGE:3949589), complete cds.
ACCESSION BC006273
VERSION BC006273.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1576)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1576)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC006273.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 15 Row: p Column: 15
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1576
/db_xref="H-InvDB:HIT000032718"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3949589"
/tissue_type="Ovary, adenocarcinoma"
/clone_lib="NIH_MGC_9"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1576
/gene="NFKBID"
/gene_synonym="IkappaBNS"
/gene_synonym="TA-NFKBH"
/db_xref="GeneID:84807"
/db_xref="HGNC:HGNC:15671"
CDS 213..665
/gene="NFKBID"
/gene_synonym="IkappaBNS"
/gene_synonym="TA-NFKBH"
/codon_start=1
/product="NFKBID protein"
/protein_id="AAH06273.1"
/db_xref="GeneID:84807"
/db_xref="HGNC:HGNC:15671"
/translation="MRSCCVVQAGLQLLASSDPPSSASQSARITGVNHRTPPREIKSN
KTVLHLAVQAANPTLVQLLLELPRGDLRTFVNMKAHGNTALHMAAALPPGPAQEAIVR
HLLAAGADPTLRNLENEQPVHLLRPGPGPEGLRQLLKRSRVAPPGLSS"
BASE COUNT 345 a 486 c 407 g 338 t
ORIGIN
1 gttctcttgg ctgtgcttaa ctctggggtc caggttgacc tggaagccag agacttcgag
61 ggcctcaccc cgctccacac ggccatcctg gcccttaacg ttgctatgcg cccttccgac
121 ctctgtcccc gggtgctgag cacacaggcc cgagacaggc tggattgtgt ccacatgttg
181 ctgcaaatgg gtgctaatca caccagccag agatgaggtc ttgctgtgtt gtccaggctg
241 gtctgcagct cctggcctca agtgatcctc cttcttcagc ttcccaaagt gctaggatta
301 caggcgtgaa ccaccgcact ccgccaaggg agatcaagag caacaagaca gttctgcact
361 tggccgtgca ggctgccaac cccactctgg ttcagctgct gctggagctg ccccggggag
421 acctgcggac ctttgtcaac atgaaggccc acgggaacac agccctccac atggcggctg
481 ccctgccccc tgggccggcc caggaggcca tcgtgcggca cctgttggca gctggggcgg
541 accccacact gcgcaacctg gagaatgagc agcccgttca cctgctgcgg cccgggccgg
601 gccctgaggg gctccggcag ctgttgaaga ggagccgtgt ggcgccgcca ggcctgtcct
661 cttaggactc aaacccagac cctggactga ttttccagtc cccaccgtcc tgcgggacag
721 ccagcgtatg ctaatgttgc aaacccatga taatgtatgt ggaatatcct gccattgggg
781 ttttacatta aaaccccaga atggctgcag aggggtgaac aggccccaat atttggggtg
841 ctgtgatacc cctcttctac ccacaaggag ccctcttgat gatttctgtg aaatcgaggc
901 cccttgattg tttctgtgaa acaccctgca cccctagtcc tttccccact gagatctttc
961 gggttctctc ccctaactca gctcttcgtt cccagaaacc cagatgtaat ccccctacgt
1021 ggtgcttggg gcatcccgat accatctcag taaatctcct acaatggcct cctcaccctc
1081 cccgggaccc acacccttca ggtcctcacc ctgagacagg agggaccctc tgagatcagg
1141 gacccttagg tctcactgct ctctgattca gagctcagct gggcccccag ttccagaccc
1201 cagcattccc ggtcactccc tccctaatct gagcatcact caagctcttt attaaactca
1261 atttgggcca gatttggtgg ctcatgcctg taatcctaac actctgggag gccgaggcgg
1321 gcggatcact tgaggtgagg agtttgagac cagcctggcc aacatggtga aaccctgtct
1381 ccactaaaaa tacaaaaaca attggctgga catggtggca tgcgcctgta gtcccagcta
1441 cttgggaggc tgaggcagaa gaattgattg aacccaggag gcggaggttg cagtgagccg
1501 agattgtgcc actgcactcc agcctaggtg acaaagagag actctgtctc aaaaaaaaaa
1561 aaaaaaaaaa aaaaaa
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