LOCUS BC006200 2513 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens zinc finger, DHHC-type containing 9, mRNA (cDNA clone
MGC:2823 IMAGE:2964425), complete cds.
ACCESSION BC006200
VERSION BC006200.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2513)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2513)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 20, 2003 this sequence version replaced BC006200.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 2 Row: d Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 56682971.
FEATURES Location/Qualifiers
source 1..2513
/db_xref="H-InvDB:HIT000032664"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2823 IMAGE:2964425"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2513
/gene="ZDHHC9"
/gene_synonym="CGI-89"
/gene_synonym="DHHC9"
/gene_synonym="ZNF379"
/db_xref="GeneID:51114"
/db_xref="HGNC:HGNC:18475"
CDS 377..1471
/gene="ZDHHC9"
/gene_synonym="CGI-89"
/gene_synonym="DHHC9"
/gene_synonym="ZNF379"
/codon_start=1
/product="zinc finger, DHHC-type containing 9"
/protein_id="AAH06200.1"
/db_xref="GeneID:51114"
/db_xref="HGNC:HGNC:18475"
/translation="MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFL
ILGTCTLFFAFECRYLAVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEA
AFIEMEIEATNGAVPQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDN
CVERFDHHCPWVGNCVGKRNYRYFYLFILSLSLLTIYVFAFNIVYVALKSLKIGFLET
LKETPGTVLEVLICFFTLWSVVGLTGFHTFLVALNQTTNEDIKGSWTGKNRVQNPYSH
GNIVKNCCEVLCGPLPPSVLDRRGILPLEESGSRPPSTQETSSSLLPQSPAPTEHLNS
NEMPEDSSTPEEMPPPEPPEPPQEAAEAEK"
BASE COUNT 568 a 691 c 594 g 660 t
ORIGIN
1 gcggttgcca cagctggttt agggccccga ccactggggc cccttgtcag gaggagacag
61 cctcccggcc cggggaggac aagtcgctgc cacctttggc tgccgacgtg attccctggg
121 acggtccgtt tcctgccgtc agctgccggc cgagttgggt ctccgtggtt caggccggct
181 cccccttcct ggtctccctt ctcccgctgg gccggtttat cgggaggaga ttgtcttcca
241 gggctagcaa ttggactttt gatgatgttt gacccagcgg caggaatagc aggcaacgtg
301 atttcaaagc tgggctcagc ctctgtttct tctctcgtgt aatcgcaaaa cccattttgg
361 agcaggaatt ccaatcatgt ctgtgatggt ggtgagaaag aaggtgacac ggaaatggga
421 gaaactccca ggcaggaaca ccttttgctg tgatggccgc gtcatgatgg cccggcaaaa
481 gggcattttc tacctgaccc ttttcctcat cctggggaca tgtacactct tcttcgcctt
541 tgagtgccgc tacctggctg ttcagctgtc tcctgccatc cctgtatttg ctgccatgct
601 cttccttttc tccatggcta cactgttgag gaccagcttc agtgaccctg gagtgattcc
661 tcgggcgcta ccagatgaag cagctttcat agaaatggag atagaagcta ccaatggtgc
721 ggtgccccag ggccagcgac caccgcctcg tatcaagaat ttccagataa acaaccagat
781 tgtgaaactg aaatactgtt acacatgcaa gatcttccgg cctccccggg cctcccattg
841 cagcatctgt gacaactgtg tggagcgctt cgaccatcac tgcccctggg tggggaattg
901 tgttggaaag aggaactacc gctacttcta cctcttcatc ctttctctct ccctcctcac
961 aatctatgtc ttcgccttca acatcgtcta tgtggccctc aaatctttga aaattggctt
1021 cttggagaca ttgaaagaaa ctcctggaac tgttctagaa gtcctcattt gcttctttac
1081 actctggtcc gtcgtgggac tgactggatt tcatactttc ctcgtggctc tcaaccagac
1141 aaccaatgaa gacatcaaag gatcatggac agggaagaat cgcgtccaga atccctacag
1201 ccatggcaat attgtgaaga actgctgtga agtgctgtgt ggccccttgc cccccagtgt
1261 gctggatcga aggggtattt tgccactgga ggaaagtgga agtcgacctc ccagtactca
1321 agagaccagt agcagcctct tgccacagag cccagccccc acagaacacc tgaactcaaa
1381 tgagatgccg gaggacagca gcactcccga agagatgcca cctccagagc ccccagagcc
1441 accacaggag gcagctgaag ctgagaagta gcctatctat ggaagagact tttgtttgtg
1501 tttaattagg gctatgagag atttcaggtg agaagttaaa cctgagacag agagcaagta
1561 agctgtccct tttaactgtt tttctttggt ctttagtcac ccagttgcac actggcattt
1621 tcttgctgca agctttttta aatttctgaa ctcaaggcag tggcagaaga tgtcagtcac
1681 ctctgataac tggaaaaatg ggtctcttgg gccctggcac tggttctcca tggcctcagc
1741 cacagggtcc ccttggaccc cctctcttcc ctccagatcc cagccctcct gcttggggtc
1801 actggtctca ttctggggct aaaagttttt gagactggct caaatcctcc caagctgctg
1861 cacgtgctga gtccagaggc agtcacagag acctctggcc aggggatcct aactgggttc
1921 ttggggtctt caggactgaa gaggagggag agtggggtca gaagattctc ctggccacca
1981 agtgccagca ttgcccacaa atccttttag gaatgggaca ggtaccttcc acttgttgta
2041 tttattagtg tagcttctcc tttgtctccc atccactctg acacctaagc cccactcttt
2101 tcccattaga tatatgtaag tagttgtagt agagataata attgacattt ctcgtagact
2161 acccagaaac ttttttaata cctgtgccat tctcaataag aatttatgag atgccagcgg
2221 catagccctt cacactctct gtctcatctc tcctcctttc tcattagccc cttttaattt
2281 gtttttcctt ttgactcctg ctcccattag gagcaggaat ggcagtaata aaagtctgca
2341 ctttggtcat ttcttttcct cagaggaagc ctgagtgctc acttaaacac tatcccctca
2401 gactccctgt gtgaggcctg cagaggccct gaatgcacaa atgggaaacc aaggcacaga
2461 gaggctctcc tctcctctcc tctcccccga tgtaccctca aaaaaaaaaa aaa
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