LOCUS BC006196 1928 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens tumor necrosis factor receptor superfamily, member 9,
mRNA (cDNA clone MGC:2172 IMAGE:2924109), complete cds.
ACCESSION BC006196
VERSION BC006196.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1928)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1928)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC006196.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 2 Row: c Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23510438.
FEATURES Location/Qualifiers
source 1..1928
/db_xref="H-InvDB:HIT000032660"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2172 IMAGE:2924109"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1928
/gene="TNFRSF9"
/gene_synonym="4-1BB"
/gene_synonym="CD137"
/gene_synonym="CDw137"
/gene_synonym="MGC2172"
/db_xref="GeneID:3604"
/db_xref="HGNC:HGNC:11924"
/db_xref="MIM:602250"
CDS 122..889
/gene="TNFRSF9"
/gene_synonym="4-1BB"
/gene_synonym="CD137"
/gene_synonym="CDw137"
/gene_synonym="MGC2172"
/codon_start=1
/product="tumor necrosis factor receptor superfamily,
member 9"
/protein_id="AAH06196.1"
/db_xref="GeneID:3604"
/db_xref="HGNC:HGNC:11924"
/db_xref="MIM:602250"
/translation="MGNSCYNIVATLLLVLNFERTRSLQDPCSNCPAGTFCDNNRNQI
CSPCPPNSFSSAGGQRTCDICRQCKGVFRTRKECSSTSNAECDCTPGFHCLGAGCSMC
EQDCKQGQELTKKGCKDCCFGTFNDQKRGICRPWTNCSLDGKSVLVNGTKERDVVCGP
SPADLSPGASSVTPPAPAREPGHSPQIISFFLALTSTALLFLLFFLTLRFSVVKRGRK
KLLYIFKQPFMRPVQTTQEEDGCSCRFPEEEEGGCEL"
BASE COUNT 579 a 421 c 421 g 507 t
ORIGIN
1 ggagtggaaa gttctccggc agccctgaga tctcaagagt gacatttgtg agaccagcta
61 atttgattaa aattctcttg gaatcagctt tgctagtatc atacctgtgc cagatttcat
121 catgggaaac agctgttaca acatagtagc cactctgttg ctggtcctca actttgagag
181 gacaagatca ttgcaggatc cttgtagtaa ctgcccagct ggtacattct gtgataataa
241 caggaatcag atttgcagtc cctgtcctcc aaatagtttc tccagcgcag gtggacaaag
301 gacctgtgac atatgcaggc agtgtaaagg tgttttcagg accaggaagg agtgttcctc
361 caccagcaat gcagagtgtg actgcactcc agggtttcac tgcctggggg caggatgcag
421 catgtgtgaa caggattgta aacaaggtca agaactgaca aaaaaaggtt gtaaagactg
481 ttgctttggg acatttaacg atcagaaacg tggcatctgt cgaccctgga caaactgttc
541 tttggatgga aagtctgtgc ttgtgaatgg gacgaaggag agggacgtgg tctgtggacc
601 atctccagcc gacctctctc cgggagcatc ctctgtgacc ccgcctgccc ctgcgagaga
661 gccaggacac tctccgcaga tcatctcctt ctttcttgcg ctgacgtcga ctgcgttgct
721 cttcctgctg ttcttcctca cgctccgttt ctctgttgtt aaacggggca gaaagaaact
781 cctgtatata ttcaaacaac catttatgag accagtacaa actactcaag aggaagatgg
841 ctgtagctgc cgatttccag aagaagaaga aggaggatgt gaactgtgaa atggaagtca
901 atagggctgt tgggactttc ttgaaaagaa gcaaggaaat atgagtcatc cgctatcaca
961 gctttcaaaa gcaagaacac catcctacat aatacccagg attcccccaa cacacgttct
1021 tttctaaatg ccaatgagtt ggcctttaaa aatgcaccac tttttttttt tttttgacag
1081 ggtctcactc tgtcacccag gctggagtgc agtggcacca ccatggctct ctgcagcctt
1141 gacctctggg agctcaagtg atcctcctgc ctcagtctcc tgagtagctg gaactacaag
1201 gaagggccac cacacctgac taactttttt gttttttgtt tggtaaagat ggcatttcac
1261 catgttgtac aggctggtct caaactccta ggttcacttt ggcctcccaa agtgctggga
1321 ttacagacat gaactgccag gcccggccaa aataatgcac cacttttaac agaacagaca
1381 gatgaggaca gagctggtga taaaaaaaaa aaaaaaaaag cattttctag ataccactta
1441 acaggtttga gctagttttt ttgaaatcca aagaaaatta tagtttaaat tcaattacat
1501 agtccagtgg tccaactata attataatca aaatcaatgc aggtttgttt tttggtgcta
1561 atatgacata tgacaataag ccacgaggtg cagtaagtac ccgactaaag tttccgtggg
1621 ttctgtcatg taacacgaca tgctccaccg tcagggggga gtatgagcag agtgcctgag
1681 tttagggtca aggacaaaaa acctcaggcc tggaggaagt tttggaaaga gttcaagtgt
1741 ctgtatatcc tatggtcttc tccatcctca caccttctgc ctttgtcctg ctccctttta
1801 agccaggtta cattctaaaa attcttaact tttaacataa tattttatac caaagccaat
1861 aaatgaactg catatgaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1921 aaaaaaaa
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