LOCUS BC006118 2242 bp mRNA linear HUM 22-FEB-2007
DEFINITION Homo sapiens zinc finger with KRAB and SCAN domains 3, mRNA (cDNA
clone MGC:12997 IMAGE:3505521), complete cds.
ACCESSION BC006118
VERSION BC006118.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2242)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2242)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 18 Row: d Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24308296.
FEATURES Location/Qualifiers
source 1..2242
/db_xref="H-InvDB:HIT000032618"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12997 IMAGE:3505521"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2242
/gene="ZKSCAN3"
/gene_synonym="ZF47"
/gene_synonym="ZFP306"
/gene_synonym="Zfp47"
/gene_synonym="ZSCAN13"
/db_xref="GeneID:80317"
/db_xref="HGNC:HGNC:13853"
CDS 149..1765
/gene="ZKSCAN3"
/gene_synonym="ZF47"
/gene_synonym="ZFP306"
/gene_synonym="Zfp47"
/gene_synonym="ZSCAN13"
/codon_start=1
/product="zinc finger with KRAB and SCAN domains 3"
/protein_id="AAH06118.1"
/db_xref="GeneID:80317"
/db_xref="HGNC:HGNC:13853"
/translation="MARELSESTALDAQSTEDQMELLVIKVEEEEAGFPSSPDLGSEG
SRERFRGFRYPEAAGPREALSRLRELCRQWLQPEMHSKEQILELLVLEQFLTILPGNL
QSWVREQHPESGEEVVVLLEYLERQLDEPAPQVSGVDQGQELLCCKMALLTPAPGSQS
SQFQLMKALLKHESVGSQPLQDRVLQVPMLAHGGCCREDAVVASRLTPESQGLLKVED
VALTLTPEWTQQDSSQGNLCRDEKQENHGSLVSLGDEKQTKSRDLPPAEELPEKEHGK
ISCHLREDIAQIPTCAEAGEQEGRLQRKQKNATGGRRHICHECGKSFAQSSGLSKHRR
IHTGEKPYECEECGKAFIGSSALVIHQRVHTGEKPYECEECGKAFSHSSDLIKHQRTH
TGEKPYECDDCGKTFSQSCSLLEHHRIHTGEKPYQCSMCGKAFRRSSHLLRHQRIHTG
DKNVQEPEQGEAWKSRMESQLENVETPMSYKCNECERSFTQNTGLIEHQKIHTGEKPY
QCNACGKGFTRISYLVQHQRSHVGKNILSQ"
BASE COUNT 609 a 500 c 621 g 512 t
ORIGIN
1 cggcgtcggc cttccactgt ggggttaaat ctcatcccgc ggctctcctc ctgtcggtcc
61 tgcagttctt ttgtccccgg gtagagggat cttctgcaga aatagcgctg gaagctagag
121 tgaggcctga gtactgcctt ggcctaggat ggctagagaa ttaagtgaaa gcacagccct
181 ggatgcccag tctacagaag accagatgga gcttctggtc ataaaggtgg aggaagaaga
241 agccggtttt cccagtagcc cagatctggg ttctgagggc tcccgcgagc gcttccgagg
301 cttccgctac ccggaggctg caggcccccg cgaggcgctg agtcggctcc gagagctctg
361 ccgacagtgg ctgcagcctg agatgcacag caaggagcag atcctggagc tgctggtgct
421 ggagcagttc ctgaccatcc tgccggggaa tctgcagagc tgggtgcggg agcagcatcc
481 agagagcggg gaggaggtgg tggtgctatt ggagtatttg gagaggcagc tggatgagcc
541 ggcgccgcag gtttcaggtg ttgaccaggg gcaagaactg ctctgttgca agatggcact
601 attgacacca gccccagggt cacaaagtag ccaatttcag ctaatgaagg ctctgctcaa
661 gcatgaatct gtgggatccc agcctttaca agatagagtt ctccaggtcc ccatgcttgc
721 ccatggagga tgctgcagag aagatgcagt ggtagcttct aggcttactc cagagtccca
781 ggggttgttg aaagtggaag atgtggccct gaccctcacc cctgaatgga cacagcagga
841 ttcatctcag gggaatctct gtagagatga aaagcaggag aaccatggca gcctggtctc
901 cctgggtgat gaaaaacaga ctaagagcag ggacttgcct ccagctgagg agcttccaga
961 aaaggagcat gggaagatat cgtgccacct gagagaagac attgcccaga ttcctacatg
1021 tgcagaagct ggtgaacagg agggcaggct acaaagaaag cagaaaaatg ccacaggagg
1081 gaggcggcac atctgccatg aatgtggaaa gagttttgct caaagctcag gcctgagtaa
1141 acacaggaga atccacactg gtgagaaacc ctacgaatgt gaagagtgtg gcaaagcctt
1201 cattgggagc tctgcccttg tcattcatca gagagtccac actggtgaga agccatatga
1261 gtgtgaagaa tgtggtaagg ccttcagtca tagctcagac cttatcaagc atcagagaac
1321 ccacactggg gagaagccct atgagtgtga tgactgtggg aagaccttca gccagagctg
1381 cagcctcctt gaacatcaca gaatccacac tggggagaag ccgtatcagt gcagtatgtg
1441 tggcaaagcc tttaggcgaa gttcacatct cctgagacat cagaggatcc atactgggga
1501 taaaaatgtt caggaacctg agcagggaga ggcctggaaa agtaggatgg aaagccagtt
1561 ggaaaatgtt gaaactccca tgtcttataa atgtaatgag tgtgaaagaa gtttcactca
1621 gaatacaggc ctcattgaac atcaaaaaat ccacactggt gagaaaccct atcagtgtaa
1681 tgcgtgtgga aaaggcttca cccgaatttc ataccttgtt caacatcaga gaagccatgt
1741 agggaaaaac atcctatcac agtgacccat gccatacatg ccagttggtg ctcatttgtc
1801 actgatctga agccactccc cctggagtct caactataga aattgtgggc tgggctttat
1861 ttaccactac acattatcag gtgttagaaa atgtagactg ggttagacaa attatcttct
1921 aagttctaga aggggtttgt aatcaaaaca tatttgatag gaggctacgg gagagttgtc
1981 tagaagaggt aagacctgaa actgtttgtt ctctcccact agaattaaat ggatgtttag
2041 actggctact tgccctaaac cagcacttgg tgatgtctac tgggtggatg gttgtgattt
2101 gggggctgct tctctgacca ttctttttga ctgtaatgaa tcctccacag ttggtcagat
2161 tcataaagtc ttatatcccc ctctgtgcct tttctgcagg tgctaataaa tgtttattga
2221 atgtaaaaaa aaaaaaaaaa aa
//