LOCUS BC006116 2209 bp mRNA linear HUM 30-DEC-2006
DEFINITION Homo sapiens vacuolar protein sorting 53 homolog (S. cerevisiae),
mRNA (cDNA clone MGC:12993 IMAGE:3504453), complete cds.
ACCESSION BC006116
VERSION BC006116.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2209)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2209)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 18 Row: d Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21361727.
FEATURES Location/Qualifiers
source 1..2209
/db_xref="H-InvDB:HIT000032616"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12993 IMAGE:3504453"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2209
/gene="VPS53"
/gene_synonym="hVps53L"
/gene_synonym="pp13624"
/db_xref="GeneID:55275"
/db_xref="HGNC:HGNC:25608"
CDS 60..2072
/gene="VPS53"
/gene_synonym="hVps53L"
/gene_synonym="pp13624"
/codon_start=1
/product="vacuolar protein sorting 53 homolog (S.
cerevisiae)"
/protein_id="AAH06116.1"
/db_xref="GeneID:55275"
/db_xref="HGNC:HGNC:25608"
/translation="MMEEEELEFVEELEAVLQLTPEVQLAIEQVFPSQDPLDRADFNA
VEYINTLFPTEQSLANIDEVVNKIRLKIRRLDDNIRTVVRGQTNVGQDGRQVKEITRD
IKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRRQYGEVANLLQGVMNVLEHFH
KYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTKRPGGPSNVLRDACLVANI
LDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDRRYAWIKRQLVDYEEKYGRM
FPREWCMAERIAVEFCHVTRAELAKIMRTRAKEIEVKLLLFAIQRTTNFEGFLAKRFS
GCTLTDGTLKKLESPPPSTNPFLEDEPTPEMEELATEKGDLDQPKKPKAPDNPFHGIV
SKCFEPHLYVYIESQDKNLGELIDRFVADFKAQGPPKPNTDEGGAVLPSCADLFVYYK
KCMVQCSQLSTGEPMIALTTIFQKYLREYAWKILSGNLPKTTTSSGGLTISSLLKEKE
GSEVAKFTLEELCLICNILSTAEYCLATTQQLEEKLKEKVDVSLIERINLTGEMDTFS
TVISSSIQLLVQDLDAACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIR
DNLASTRKYFTQFCVKFANSFIPKFITHLFKCKPISMVGAEQVRWT"
BASE COUNT 627 a 541 c 562 g 479 t
ORIGIN
1 ggcggctgga ggcctgagtt gggctcgcgg cgggggtcgg cagggggccg ggtggcggaa
61 tgatggagga ggaggaactg gagttcgtgg aggagctgga agccgtgctg cagctcacgc
121 ccgaggtgca gctggccatc gagcaggtgt ttccaagcca ggaccctcta gatcgagcag
181 atttcaatgc tgttgagtat atcaataccc tgttcccaac cgagcaatct ctggcgaaca
241 tagacgaagt cgtgaacaaa attaggctga aaataaggag actggatgac aatattcgaa
301 ctgttgtaag aggtcagacg aacgtggggc aggatggacg gcaagtgaaa gaaatcaccc
361 gtgatattaa gcaattagat cacgccaaac gccacctgac cacctcaatc accacactga
421 accacctgca catgctggca ggaggtgtcg actccctcga agccatgacc aggcgaagac
481 aatacggaga agttgctaat ctccttcagg gtgtgatgaa tgtcctggag cacttccaca
541 agtatatggg gattccgcag atccggcagc tttccgaaag agtgaaggct gcacagactg
601 agttaggaca gcaaatcctg gcagattttg aagaagcgtt tccttcccag ggcaccaaga
661 gaccaggagg acccagcaat gttctacgag atgcatgtct ggttgctaat attctagatc
721 ccaggatcaa acaggaaatc atcaaaaagt ttattaaaca gcatctgtca gagtatctgg
781 tactttttca agaaaaccaa gatgttgcct ggctggacaa aatcgacaga cgctatgcct
841 ggataaaacg ccagcttgtg gactatgagg agaaatacgg ccgcatgttt ccacgtgagt
901 ggtgcatggc tgagaggatt gcggtggaat tttgccatgt gacaagggca gaacttgcca
961 agattatgcg taccagagcg aaggaaattg aagtgaaatt gcttcttttt gctattcaaa
1021 gaacaactaa ctttgagggg tttcttgcaa aacgcttctc cggctgcacc ctgaccgatg
1081 ggaccctgaa aaagcttgag tctccacccc catctaccaa tcccttcctg gaagatgagc
1141 caacaccaga gatggaggaa ctggcaacgg agaaaggaga tttagatcaa ccaaagaagc
1201 ctaaagcccc agacaatcca tttcatggca ttgtttccaa gtgttttgag cctcatctct
1261 acgtgtatat cgaatcccaa gacaagaacc tcggagagct gatagatcgg tttgtggctg
1321 atttcaaagc ccaggggcca cctaagccca acactgatga agggggtgcc gtgctcccca
1381 gctgcgccga cctctttgtc tactacaaga agtgcatggt gcaatgctct cagctcagta
1441 ctggggagcc catgatcgcc ctgaccacca ttttccagaa gtacctccga gaatatgcct
1501 ggaaaatcct ctctggcaac ctgcccaaaa ccacaaccag cagtggagga ctgactatca
1561 gcagcctcct caaggaaaag gagggctcag aagtagccaa gttcactctg gaggagctct
1621 gcctcatctg taacatcctg agcacggcag agtactgtct ggccaccacc cagcagctag
1681 aagaaaaact caaagaaaaa gtggatgtaa gtctgattga acgaatcaat ctgactggag
1741 agatggacac gttcagcacc gtcatctcca gcagtattca gctgctggtt caggatctgg
1801 atgctgcctg tgatcctgcc ctgactgcca tgagcaagat gcagtggcag aacgtggagc
1861 acgttggtga ccagagcccc tacgtcacct ctgtcattct gcacatcaag cagaacgtcc
1921 ccatcatccg tgacaacctg gcttccacac gcaagtactt cactcagttc tgcgttaaat
1981 ttgcaaactc cttcattccc aaattcatca cccacctctt caagtgcaag ccaattagca
2041 tggtgggagc agaacaggtg agatggacgt agtatcaggc atttgcctgg cagcttttgt
2101 tgtagatcaa gcacatattc ttctagtcca gatctacttg gcaggaataa aattgatgat
2161 gtcccctgtt tggggacagt ataatgactc aaaaaaaaaa aaaaaaaaa
//