LOCUS BC006000 1040 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens calpain, small subunit 2, mRNA (cDNA clone MGC:14804
IMAGE:4092675), complete cds.
ACCESSION BC006000
VERSION BC006000.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1040)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1040)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 21 Row: k Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14161691.
FEATURES Location/Qualifiers
source 1..1040
/db_xref="H-InvDB:HIT000032582"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:14804 IMAGE:4092675"
/tissue_type="Bladder, carcinoma"
/clone_lib="NIH_MGC_53"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1040
/gene="CAPNS2"
/gene_synonym="MGC12536"
/gene_synonym="MGC14804"
/db_xref="GeneID:84290"
/db_xref="HGNC:HGNC:16371"
CDS 86..832
/gene="CAPNS2"
/gene_synonym="MGC12536"
/gene_synonym="MGC14804"
/codon_start=1
/product="calpain, small subunit 2"
/protein_id="AAH06000.1"
/db_xref="GeneID:84290"
/db_xref="HGNC:HGNC:16371"
/translation="MFLAKALLEGADRGLGEALGGLFGGGGQRREGGGRNIGGIVGGI
VNFISEAAAAQYTPEPPPTQQHFTSVEASESEEVRRFRQQFTQLAGPDMEVGATDLMN
ILNKVLSKHKDLKTDGFSLDTCRSIVSVMDSDTTGKLGFEEFKYLWNNIKKWQCVYKQ
YDRDHSGSLGSSQLRGALQAAGFQLNEQLYQMIVRRYANEDGDMDFNNFISCLVRLDA
MFRAFKSLDRDRDGLIQVSIKEWLQLTMYS"
BASE COUNT 303 a 209 c 253 g 275 t
ORIGIN
1 cacatgtaaa ctacttgaac tccatttcat cttttttcat accatctcta agattgctgc
61 cgcatttgct tgttaaactg aaagcatgtt tcttgcaaag gctctattgg aaggagcaga
121 tcgaggtctt ggagaagctc ttggaggcct ctttggagga ggtggtcaga gaagagaagg
181 aggaggaaga aatattggag ggatagttgg aggaattgtg aattttatca gtgaggctgc
241 agcagctcag tatactccag aaccgcctcc cactcagcag catttcacca gtgtggaggc
301 ctcagaaagt gaggaagtta ggcgatttcg gcaacaattt acacagctgg ctggaccaga
361 catggaggtg ggtgccactg atctgatgaa tattctcaac aaagtccttt ctaagcacaa
421 agatcttaag actgacggtt ttagtcttga cacctgccgg agcattgtgt ctgtcatgga
481 cagtgacacg actggtaagc tgggctttga agaatttaag tatctgtgga acaacatcaa
541 gaaatggcag tgtgtttata agcagtatga cagggaccat tctgggtctc tgggaagttc
601 tcagctgcgg ggagctctgc aggccgcagg cttccagcta aatgaacaac tttaccaaat
661 gattgtccgc cggtatgcta atgaagatgg agatatggat tttaacaatt tcatcagctg
721 cttggtccgc ctggatgcca tgtttcgtgc cttcaagtct ctggatagag atagagatgg
781 cctgattcaa gtgtctatca aagaatggct gcagttgacc atgtattcct gaagtgggaa
841 ctgagaagtc aagatcctcc ctggaggaca ggactgaaaa ccttgccaag ctgtacacag
901 ttgctgatac cctgtgcaac agctctcatt tcctggcaag ctctttcaca accctacata
961 tttctgatca tgtgctgcct tttactgctg aattaaaaca gatatttcat aaaaaaaaaa
1021 aaaaaaaaaa aaaaaaaaaa
//