LOCUS BC005847 3612 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens tripartite motif-containing 56, mRNA (cDNA clone
MGC:2760 IMAGE:2907142), complete cds.
ACCESSION BC005847
VERSION BC005847.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3612)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3612)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC005847.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 2 Row: n Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 30794215.
FEATURES Location/Qualifiers
source 1..3612
/db_xref="H-InvDB:HIT000086538"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2760 IMAGE:2907142"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3612
/gene="TRIM56"
/gene_synonym="DKFZP667O116"
/gene_synonym="RNF109"
/db_xref="GeneID:81844"
/db_xref="HGNC:HGNC:19028"
CDS 298..2565
/gene="TRIM56"
/gene_synonym="DKFZP667O116"
/gene_synonym="RNF109"
/codon_start=1
/product="tripartite motif-containing 56"
/protein_id="AAH05847.3"
/db_xref="GeneID:81844"
/db_xref="HGNC:HGNC:19028"
/translation="MVSHGSSPSLLEALSSDFLACKICLEQLRAPKTLPCLHTYCQDC
LAQLADGGRVRCPECRETVPVPPEGVASFKTNFFVNGLLDLVKARACGDLRAGKPACA
LCPLVGGTSTGGPATARCLDCADDLCQACADGHRCTRQTHTHRVVDLVGYRAGWYDEE
ARERQAAQCPQHPGEALRFLCQPCSQLLCRECRLDPHLDHPCLPLAEAVRARRPGLEG
LLAGVDNNLVELEAARRVEKEALARLREQAARVGTQVEEAAEGVLRALLAQKQEVLGQ
LRAHVEAAEEAARERLAELEGREQVARAAAAFARRVLSLGREAEILSLEGAIAQRLRQ
LQGCPWAPGPAPCLLPQLELHPGLLDKNCHLLRLSFEEQQPQKDGGKDGAGTQGGEES
QSRREDEPKTERQGGVQPQAGDGAQTPKEEKAQTTREEGAQTLEEDRAQTPHEDGGPQ
PHRGGRPNKKKKFKGRLKSISREPSPALGPNLDGSGLLPRPIFYCSFPTRMPGDKRSP
RITGLCPFGPREILVADEQNRALKRFSLNGDYKGTVPVPEGCSPCSVAALQSAVAFSA
SARLYLINPNGEVQWRRALSLSQASHAVAALPSGDRVAVSVAGHVEVYNMEGSLATRF
IPGGKASRGLRALVFLTTSPQGHFVGSDWQQNSVVICDGLGQVVGEYKGPGLHGCQPG
SVSVDKKGYIFLTLREVNKVVILDPKGSLLGDFLTAYHGLEKPRVTTMVDGRYLVVSL
SNGTIHIFRVRSPDS"
BASE COUNT 744 a 1035 c 1201 g 632 t
ORIGIN
1 cctggctggg acggaagttg caccacaagt acaattagtt tcagttttgt ttcttttcca
61 ggcacccagc aacggcggcc tccaggcctc aggccccctc accatcctag aggtcaagat
121 cagctctggc tagttctcac aggtctgacc caacaagtag cactgacatt tttacgtttg
181 ctggatgtac acacggaagt ggaggaggag gaggagaagg aggagggcag ctccttagct
241 caagagcaag tggcccaagg cctcagaaga ctagaaggaa gttcctggcc attcagcatg
301 gtttcccacg ggtcctcgcc ctccctcctg gaggccctga gcagcgactt cctggcctgt
361 aaaatctgcc tggagcagct gcgggcaccc aagacactgc cctgcctgca tacctactgc
421 caagactgcc tggcacagct ggcggatggc ggccgcgtcc gctgccccga gtgccgcgag
481 acagtgcctg tgccgcccga gggtgtggcc tccttcaaga ccaacttctt cgtcaatggg
541 ctgctggacc tggtgaaggc ccgggcctgt ggagacctgc gtgccgggaa gccagcctgt
601 gccctgtgtc ccctggtggg tggcaccagc accggggggc cggccacggc ccggtgcctg
661 gactgtgccg atgacttgtg ccaggcctgt gccgacgggc accgctgcac ccgccagacc
721 cacacccacc gcgtggtgga cctggtgggc tacagggccg ggtggtatga tgaggaggcc
781 cgggagcgcc aagcggccca gtgtccccag caccccgggg aggcactgcg cttcctgtgc
841 cagccctgct cacagttgct gtgcagagag tgccgcctag acccccacct ggaccacccc
901 tgcctgcctc tggctgaagc tgtgcgtgcc cggaggccgg gcctggaggg actgctggcc
961 ggtgtggaca ataacctggt ggagctggag gcagcgcgga gggtggagaa ggaggcgcta
1021 gcccggctgc gggagcaggc ggcccgggtg gggactcagg tggaggaggc ggctgagggc
1081 gtcctccggg ccctgctggc ccagaagcag gaggtgctgg ggcagctacg agcccacgtg
1141 gaggctgccg aagaagctgc tcgggagagg ctggcggagc ttgagggccg ggagcaggtg
1201 gccagggcgg cagccgcctt cgcccgccgg gtactcagcc tggggcgaga ggccgagatc
1261 ctctccctgg aaggggcgat cgcacagcgg ctcaggcagc tgcagggctg cccctgggca
1321 ccaggcccgg ccccctgcct gctcccacag ctggagctcc atcctgggct cctggacaag
1381 aactgccacc ttcttcggct gtcctttgag gagcagcagc cccagaagga tggtgggaaa
1441 gacggagctg gtacccaggg aggtgaggag agccagagcc ggagggagga tgagccgaag
1501 actgagagac agggtggagt ccagccccag gccggagatg gagcccagac cccaaaagag
1561 gaaaaagccc agacaacccg agaagaggga gcccagacct tggaggagga cagggcccag
1621 acaccccacg aggatggagg accccagccc cacaggggtg gcagacccaa caagaagaaa
1681 aagttcaaag gcaggctcaa gtcaatttcc cgggagccca gcccagccct ggggccgaat
1741 ctggacggct ctggcctcct ccccagaccc atcttttact gcagtttccc cacgcggatg
1801 cctggagaca agcggtcccc ccggatcacc gggctctgtc ccttcggtcc ccgggagatc
1861 ctggtggcgg atgagcagaa ccgggcactg aaacgcttct ccctcaacgg cgactacaag
1921 ggcaccgtgc cggtccctga gggctgctcc ccttgcagcg tggccgccct gcagagcgcg
1981 gtggccttct ccgctagcgc acggctctat ctcatcaacc ccaatggcga agtgcagtgg
2041 cgcagggccc tgagcctctc ccaggccagc cacgcggtgg cggcactgcc tagcggggac
2101 cgcgtggctg tcagcgtggc gggccacgtg gaggtgtaca atatggaagg cagcctggcc
2161 acccggttca ttcctggagg caaggccagc cggggcctgc gggcgctggt gtttctgacc
2221 accagccccc aggggcattt cgtggggtcg gactggcagc agaatagtgt ggtaatctgt
2281 gatgggctgg gccaggtggt tggggagtac aaggggccag gcctgcatgg ctgccagccg
2341 ggctccgtgt ctgtggataa gaagggctac atctttctga cccttcgaga agtcaacaag
2401 gtggtgatcc tggacccgaa ggggtccctc cttggagact tcctgacagc ctaccacggc
2461 ctggaaaagc cccgggttac caccatggtg gatggcaggt acctggtcgt gtccctcagt
2521 aacgggacca tccacatctt tcgggtccgt tctccggaca gttaaagggg ctaggactag
2581 ggtgagaggg agtggggagg gagagggcag gaaggaggca gagctgtccg tgggaggtgg
2641 aggccgagga cattttcctg aagggcaggg gttggcaact tttcaacatg gagtgccaaa
2701 ctgctaaccc gtcttctagt gtgtagaata gggaccaagg tggtggcgtg accttaactc
2761 tcagaagcag aggaggcagg tgggtggagg gggatgctgg gaattcacct gcctcttgct
2821 ttttgtgggt ggctgctgcc accaccgccg ctgctatata gtttaggttt ctgaggtttg
2881 tgagcctgtc ctgctttgca ttcttcaaaa ccattcctga tagagtagcc gagggagagt
2941 cttggggcca agaagggccc agggtgggtc aggcgtgtgc actgtggaac agagctgaga
3001 ccccggcccc ccttggactg gcacagggtc ctacagagtc agaggaggcc tgagatttcg
3061 aatgggcagt gaatggcctc ttctgccagc cacaggcagg atgctccttg atcacggcat
3121 cccccggcgg tagtacaggg tgagcttgca ggagggtctg caagtgcaga cagcagctgg
3181 ggccaaagag gtgttaggtt caaaggctgc gaagagaata ggctactgga aaaccaaacc
3241 caacagaatt cacgtccaaa aatccacatt ctccatcgct tctcagcctt ttggctaaga
3301 ttaagtatta aaaaaaaacc aggctctgcc aggcgcagtg gctcatgcct ataatcccgg
3361 cactttggga gtctgtggca ggaggattgc ttgaggccag gagtttgaga ccagcctggg
3421 caacatagcg agaccccatc tctacaaaag attaaaaatt agctgcgtgt agtagcatat
3481 gcctttcaac gtagctactc aggaggctga ggtgggagga tcccttgagc cgaggagttt
3541 gagtctgcag tgagctatga tcgcaccact gcattccaga ccccatctcg aaaaaaaaaa
3601 aaaaaaaaaa aa
//