LOCUS BC005408 3509 bp mRNA linear HUM 03-FEB-2004 DEFINITION Homo sapiens leucine-rich repeat kinase 1, mRNA (cDNA clone IMAGE:3463078), partial cds. ACCESSION BC005408 VERSION BC005408.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3509) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3509) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (27-MAR-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 4 Row: n Column: 18 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis. FEATURES Location/Qualifiers source 1..3509 /db_xref="H-InvDB:HIT000032446" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:3463078" /tissue_type="Cervix, carcinoma" /clone_lib="NIH_MGC_12" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene <1..3509 /gene="LRRK1" /gene_synonym="FLJ23119" /gene_synonym="KIAA1790" /db_xref="GeneID:79705" CDS <1..1982 /gene="LRRK1" /gene_synonym="FLJ23119" /gene_synonym="KIAA1790" /codon_start=3 /product="LRRK1 protein" /protein_id="AAH05408.2" /db_xref="GeneID:79705" /translation="ISIHPLCFALELAPLSSLNTVLSENARDSSFIPLGHMLTQKIAY QIASGLAYLHKKNIIFCDLKSDNILVWSLDVKEHINIKLSDYGISRQSFHEGALGVEG TPGYQAPEIRPRIVYDEKVDMFSYGMVLYELLSGQRPALGHHQLQIAKKLSKGIRPVL GQPEEVQFRRLQALMMECWDTKPEKRPLALSVVSQMKDPTFATFMYELCCGKQTAFFS SQGQEYTVVFWDGKEESRNYTVVNTEKGLMEVQRMCCPGMKVSCQLQVQRSLWTATED QKIYIYTLKGMCPLNTPQQALDTPAVVTCFLAVPVIKKNSYLVLAGLADGLVAVFPVV RGTPKDSCSYLCSHTANRSKFSIADEDARQNPYPVKAMEVVNSGSEVWYSNGPGLLVI DCASLEICRRLEPYMAPSMVTSVVCSSEGRGEEVVWCLDDKANSLVMYHSTTYQLCAR YFCGVPSPLRDMFPVRPLDTEPPAASHTANPKVPEGDSIADVSIMYSEELGTQILIHQ ESLTDYCSMSSYSSSPPRQAARSPSSLPSSPASSSSVPFSTDCEDSDMLHMPGAASDR SEHDLTPMDGETFSQHLQAVKILAVRDLIWVPRRGGDVIVIGLEKDSEAQRGRVIAVL KARELTPHGIMPVSSVKVCWAGWPVRDMVYMAAVM" misc_feature 15..581 /gene="LRRK1" /gene_synonym="FLJ23119" /gene_synonym="KIAA1790" /note="Pkinase; Region: Protein kinase domain" /db_xref="CDD:pfam00069" BASE COUNT 810 a 994 c 953 g 752 t ORIGIN 1 gcatcagcat ccacccgctc tgcttcgccc tggagctcgc gccgctcagc agcctcaaca 61 ccgtgctgtc cgagaacgcc agagattctt cctttatacc cctgggacac atgctcaccc 121 aaaaaatagc ctaccagatc gcctcgggcc tggcctacct gcacaagaaa aacatcatct 181 tctgtgacct gaagtcggac aacattctgg tgtggtccct tgacgtcaag gagcacatca 241 acatcaagct atctgactac gggatttcga ggcagtcatt ccatgagggc gccctaggcg 301 tggagggcac tcctggctac caggccccag agatcaggcc tcgcattgta tatgatgaga 361 aggtagatat gttctcctat ggaatggtgc tctacgagtt gctgtcagga cagcgccctg 421 cactgggcca ccaccagctc cagattgcca agaagctgtc caagggcatc cgcccggttc 481 tggggcagcc ggaggaagtg cagttccggc gactgcaggc gctcatgatg gagtgctggg 541 acactaagcc agagaagcga ccgctggccc tgtcggtggt gagccagatg aaggacccga 601 cttttgccac cttcatgtat gaactgtgct gtgggaagca gacagccttc ttctcatccc 661 agggccagga gtacaccgtg gtgttttggg atggaaaaga ggagtccagg aactacacgg 721 tggtgaacac agagaagggc ctcatggagg tgcagaggat gtgctgccct gggatgaagg 781 tgagctgcca gctccaggtc cagagatccc tgtggacagc caccgaggac cagaaaatct 841 acatctacac cctcaagggc atgtgcccct taaacacacc ccaacaggcc ttggatactc 901 cagctgtcgt cacctgcttc ttggccgtgc ctgttattaa aaagaattcc tacctggtct 961 tagcgggcct cgccgatggg cttgtggctg tgtttcccgt ggtgcggggc accccaaagg 1021 acagctgctc ctacctgtgc tcacacacag ccaacaggtc caagttcagc atcgcggatg 1081 aagacgcacg gcagaacccc tacccagtga aggccatgga ggtggtcaac agcggctctg 1141 aggtctggta cagcaatggg ccgggcctcc ttgtcatcga ctgtgcctcc ctggagatct 1201 gcaggcggct ggagccctac atggccccct ccatggttac gtcagtcgtg tgcagctctg 1261 agggcagagg ggaggaggtc gtctggtgcc tggatgacaa ggccaactcc ttggtgatgt 1321 accactccac cacctaccag ctgtgtgccc ggtacttctg cggggtcccc agccccctca 1381 gggacatgtt tcccgtgcgg cccttggaca cggaaccccc ggcagccagc cacacggcca 1441 acccaaaggt gcctgagggg gactccatcg cggacgtgag catcatgtac agtgaggagc 1501 tgggcacgca gatcctgatc caccaggaat cactcactga ctactgctcc atgtcctcct 1561 actcctcatc cccaccccgc caggctgcca ggtccccctc aagcctcccc agctccccag 1621 caagttcttc cagtgtgcct ttctccaccg actgcgagga ctcagacatg ctacatatgc 1681 ccggtgctgc ctccgacagg tctgagcatg acctgacccc catggacggg gagaccttca 1741 gccagcacct gcaggccgtg aagatcctcg ccgtcagaga cctcatttgg gtccccaggc 1801 gcggtggaga tgttatcgtc attggcctgg agaaggattc tgaagcccag cggggccgag 1861 tcattgccgt cttaaaagcc cgagagctga ctccgcatgg gattatgcca gtctcctctg 1921 tgaaggtatg ctgggcaggg tggcctgtcc gggacatggt ctacatggct gcagtgatgt 1981 gaggctggcg ccagctgcag ctccccacag tgtttacacc ccgcactttg actaccgagc 2041 cccacacggg tgctggtgga tgctgccgtg gtggcaaagg acactgttgt gtgcaccttt 2101 gaaaatgaaa acacagagtg gtgcctggcc gtctggaggg gctggggcgc cagggagttc 2161 gacattttct accagtccta cgaggagctg ggccggctgg aggcttgcac tcgcaagaga 2221 aggtaattcc tgtggaatga ctgtcacaca tcagagctgg ctggcccggg gctgcagcct 2281 gacccctctg ccatcggcct ctagttctcc aaggacctag aagacagatg gagttctccc 2341 ctgaactcct tgctgctaag aagtgctgag aagttactcg cctggcggtg gctccagggt 2401 tctctggttc tctggagcag agttctctga ataccccatc ccccaactgc tgattttaca 2461 gccccaggga agacagtggt atcaggctgg gagcggcctc ctctggcctc ccccatcagt 2521 ttgcaggagc aggggtgcag gatcctgttc tgagctgggt caaacaaagc agggccgggc 2581 cttcctgcca tccccaggtc tcagatggaa ttacactaga ggccctccgc tgggaagcac 2641 ttgaggtagg gcaggagggg ggctgtgacc cctgcccttt ccccgccaga gacctcaggc 2701 tctcagcaca ttccacaggc tcctgagtcc ccgaggcctg ggccagcttg ggcaagccaa 2761 gatcagatgt ctctgtgttc gggaaggtct ccgtgtggga aagcccttgg gggatcccgg 2821 gtgaggagtg ttgccccatc cagagaatga atgagttcct ttaagtgcca ccgccagcaa 2881 gcccagaggc acacagtccg agtgcacccg cttagccttt acattcctct ccaccgacaa 2941 aaggaagggg aaactcaatc agcaggactt cagaaagggc cttgtgttta tagctttgtc 3001 aagtaaattt ggacgcagct ggagcacagg ccctgtttgt ttgcacataa taatcttgtt 3061 tatcacttta aaaaattcag taatatctca gcagtcaggc ttctggttgt gaaatcacat 3121 tgtatgggat ttataccaaa ttatgtattt gctaaacatt cactgcacac gtgtacagcg 3181 gagtacgaaa aggaacgttg tccacagggg atttatggat acaacagcaa acattttata 3241 aactatgcac atgcattaca cacatgcaca cacatatgca cacacatgtg caaacatagc 3301 cacttttttg tcaagagtta ccctttgggg ctccttaaac cagaatggga gtttgaaaga 3361 gagatcatac tccagctgaa gtttgttgac ccttttctaa aattaaaaag atcaaattta 3421 gtatttgctg gatatgcagg gagatgagac tcttttaatc tcaaaataaa cagattcttt 3481 caaaaaaaaa aaaaaaaaaa aaaaaaaaa //