LOCUS BC005407 2941 bp mRNA linear HUM 30-MAR-2004
DEFINITION Homo sapiens nucleoporin 188kDa, mRNA (cDNA clone IMAGE:3461492),
partial cds.
ACCESSION BC005407
VERSION BC005407.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2941)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2941)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (27-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 4 Row: d Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..2941
/db_xref="H-InvDB:HIT000086526"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3461492"
/tissue_type="Cervix, carcinoma"
/clone_lib="NIH_MGC_12"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..2941
/gene="NUP188"
/gene_synonym="KIAA0169"
/db_xref="GeneID:23511"
CDS <1..2564
/gene="NUP188"
/gene_synonym="KIAA0169"
/codon_start=3
/product="NUP188 protein"
/protein_id="AAH05407.1"
/db_xref="GeneID:23511"
/translation="VTIAFLRLITTLVKGQLGSTQSQGLVPCVMFVLKEMLPSYHKWR
YNSHGVREQIGCLILELIHAILNLCHETDLHSSHTPSLQFLCICSLAYTEAGQTVINI
MGIGVDTIDMVMAAQPRSDGAEGQGQGQLLIKTVKLAFSVTNNVIRLKPPSNVVSPLE
QALSQHGAHGNNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGNDAAA
IRDAFLTRLQSKIEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGSDGSKEFSLG
MWSCLHAVLELIDSQQQDRYWCPPLLHRAAIAFLHALWQDRRDSAMLVLRTKPKFWEN
LTSPLFGTLSPPSETSEPSILETCALIMKIICLEIYYVVKGSLDQSLKDTLKKFSIEK
RFAYWSGYVKSLAVHVAETEGSSCTSLLEYQMLVSAWRMLLIIATTHADIMHLTDSVV
RRQLFLDVLDGTKALLLVPASVNCLRLGSMKCTLLLILLRQWKRELGSVDEILGPLTE
ILEGVLQADQQLMEKTKAKVFSAFITVLQMKEMKVSDIPQYSQLVLNVCETLQEEVIA
LFDQTRHSLALGSATEDKDSMETDDCSRSRHRDQRDGVCVLGLHLAKELCEVDEDGDS
WLQVTRRLPILPTLLTTLEVSLRMKQNLHFTEATLHLLLTLARTQQGATAVAGAGITQ
SICLPLLSVYQLSTNGTAQTPSASRKSLDAPSWPGVYRLSMSLMEQLLKTLRYNFLPE
ALDFVGVHQERTLQCLNAVRTVQSLACLEEADHTVGFILQLSNFMKEWHFHLPQLMRD
IQVGAQDGVLESGVMLGDREAVRSHWGTPSELQDVPERGLFPWGAQGLLSCAYSG"
BASE COUNT 685 a 775 c 788 g 693 t
ORIGIN
1 gggttactat tgcctttctg cgcttgatca ccacccttgt caaggggcaa cttggtagta
61 cccagagcca aggacttgta ccctgtgtaa tgtttgtgct gaaggagatg cttcccagct
121 accataagtg gcgctacaac tctcatggag tgagggaaca gattggttgc ctgatcttgg
181 agctgattca tgcgatactg aacctgtgcc acgagacaga cctgcacagc agtcatactc
241 ccagcctgca gtttctctgc atctgcagcc tggcatacac agaagcagga cagacagtta
301 tcaatatcat gggcattggc gtggacacca ttgacatggt gatggctgct cagcctcgaa
361 gtgatggggc agagggccag gggcagggcc agctgctgat caagacagtg aaactggcat
421 tctccgtcac caacaatgtt attcggctga aacctccttc taatgtggtg tcccccctgg
481 aacaggctct ctcacaacat ggtgctcatg gaaacaacct cattgctgtt ctagccaaat
541 acatctacca caaacatgac cctgctttgc cacgtcttgc cattcagctg ctgaaacgtc
601 tggccacggt ggccccaatg tcagtgtatg cttgtctggg caatgatgcg gctgccattc
661 gtgatgcctt cctgacccga ttgcagagca aaattgagga catgcgcatc aaagtcatga
721 ttctagagtt cctcactgtt gcagtagaga cccagccagg cctcatcgaa ctgtttctga
781 acctggaagt taaggatggc agtgatggct caaaggaatt cagccttggg atgtggagct
841 gtctccatgc agtgctggag ctgattgatt cccaacagca agatcgatac tggtgcccac
901 ccctgctgca tcgtgccgcc attgcctttt tgcatgctct gtggcaggat cggagggaca
961 gtgccatgct ggtcctccga accaaaccca agttttggga aaatttaacc agtccgctgt
1021 ttggaaccct ttctcctccc tctgaaacat cagagcccag catcctggaa acctgtgccc
1081 taatcatgaa gataatttgc ttggagatat actatgtagt aaagggttca ttagaccagt
1141 cattaaagga tacactgaag aaattttcca tcgagaaacg ctttgcctac tggtcagggt
1201 atgtcaagtc attggcagtt cacgtggccg aaacagaagg cagcagctgc acctccttgt
1261 tagagtacca gatgctggtg tccgcctgga ggatgcttct catcattgcc accactcatg
1321 cagatataat gcacctgact gactctgtgg tgcgtcgcca gctctttctt gacgtgcttg
1381 atggaaccaa agcattactc ctagttccag cctcagtgaa ctgccttcgc cttggctcca
1441 tgaagtgcac tctgctgctt atcctcctcc ggcagtggaa gagagagtta ggttctgtgg
1501 atgaaatcct tggacccttg acggagatcc tggagggagt gctgcaggcc gaccagcaac
1561 tcatggagaa gaccaaggcc aaggtgttct cagcattcat cacagtgttg caaatgaagg
1621 agatgaaagt aagtgacatc ccccagtact cccagctggt gctgaatgtc tgtgagaccc
1681 tccaagagga agtgattgca ctcttcgacc agacccgcca cagtctggca ttaggcagtg
1741 ccacagagga caaggacagc atggagactg acgactgttc tcggtcccgg cacagggacc
1801 agcgtgatgg ggtgtgtgtc ctgggcctgc acctggccaa ggagctgtgt gaggtagacg
1861 aggatggtga ctcctggctg caggtaaccc gcaggctccc catcctaccc accctcctca
1921 ccactctaga ggtgagcctt cgcatgaagc agaacctgca tttcactgag gccacattgc
1981 atctgctcct caccctggct cgcactcagc agggagccac agcagtggct ggagctggca
2041 tcacccagag catttgtttg ccccttctga gtgtgtacca gctgagcacc aacggcacag
2101 cacagacacc tagtgcctct cggaagtccc tggatgcccc ctcttggcca ggagtctacc
2161 gcctgtccat gtccctgatg gagcagctgc tcaaaactct gcgctacaac ttcctgcctg
2221 aggccctgga cttcgtgggt gtccaccagg agcggacctt acagtgcctc aacgcagtga
2281 ggacagtgca gagtctggcc tgcctggagg aggcggacca caccgtgggt tttattctgc
2341 agctctctaa cttcatgaag gagtggcact tccacctgcc tcagctcatg cgtgatatcc
2401 aggtgggggc ccaagatggt gtcttggagt ctggggtaat gcttggagac agggaggctg
2461 tgaggtctca ctggggcact cctagtgaat tgcaggatgt tcctgaacgg gggcttttcc
2521 cttggggagc acagggtttg ctgtcatgtg cttactctgg ctaaatgttt ccttccatag
2581 tcaagggcag ccatgtaggt taagaatttg gacttttatc agttagatct tggttcagat
2641 cccttaagaa tacacttggg gccgggcatg gtggctcacg cctgtaatcc tagcactttg
2701 ggaggcagtc aggagttcga gatcagcctg gccaacatgg tgaaaccctg tctctactaa
2761 aaatacaaaa attagctggg cgtggtggca cgtgactgta atcccagcta ctcgggaggc
2821 tgagttggga gaatcgcttg aacctgggag gcggaggttg cagtgagcta ggatcgaacc
2881 attacactcc agcctgggtg acagagcgag actccgtccc aaaaagaaaa aaaaaaaaaa
2941 a
//