LOCUS BC005397 1029 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens calpain, small subunit 2, mRNA (cDNA clone MGC:12536 IMAGE:3685903), complete cds. ACCESSION BC005397 VERSION BC005397.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1029) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1029) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (27-MAR-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: CLONTECH Laboratories, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 16 Row: g Column: 13 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 14161691. FEATURES Location/Qualifiers source 1..1029 /db_xref="H-InvDB:HIT000032439" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:12536 IMAGE:3685903" /tissue_type="Bladder, carcinoma" /clone_lib="NIH_MGC_53" /lab_host="DH10B" /note="Vector: pDNR-LIB" gene 1..1029 /gene="CAPNS2" /gene_synonym="MGC12536" /gene_synonym="MGC14804" /db_xref="GeneID:84290" /db_xref="HGNC:HGNC:16371" CDS 74..820 /gene="CAPNS2" /gene_synonym="MGC12536" /gene_synonym="MGC14804" /codon_start=1 /product="calpain, small subunit 2" /protein_id="AAH05397.1" /db_xref="GeneID:84290" /db_xref="HGNC:HGNC:16371" /translation="MFLAKALLEGADRGLGEALGGLFGGGGQRREGGGRNIGGIVGGI VNFISEAAAAQYTPEPPPTQQHFTSVEASESEEVRRFRQQFTQLAGPDMEVGATDLMN ILNKVLSKHKDLKTDGFSLDTCRSIVSVMDSDTTGKLGFEEFKYLWNNIKKWQCVYKQ YDRDHSGSLGSSQLRGALQAAGFQLNEQLYQMIVRRYANEDGDMDFNNFISCLVRLDA MFRAFKSLDRDRDGLIQVSIKEWLQLTMYS" BASE COUNT 298 a 207 c 253 g 271 t ORIGIN 1 acttgaactc catttcatct tttttcatac catctctaag attgctgccg catttgcttg 61 ttaaactgaa agcatgtttc ttgcaaaggc tctattggaa ggagcagatc gaggtcttgg 121 agaagctctt ggaggcctct ttggaggagg tggtcagaga agagaaggag gaggaagaaa 181 tattggaggg atagttggag gaattgtgaa ttttatcagt gaggctgcag cagctcagta 241 tactccagaa ccgcctccca ctcagcagca tttcaccagt gtggaggcct cagaaagtga 301 ggaagttagg cgatttcggc aacaatttac acagctggct ggaccagaca tggaggtggg 361 tgccactgat ctgatgaata ttctcaacaa agtcctttct aagcacaaag atcttaagac 421 tgacggtttt agtcttgaca cctgccggag cattgtgtct gtcatggaca gtgacacgac 481 tggtaagctg ggctttgaag aatttaagta tctgtggaac aacatcaaga aatggcagtg 541 tgtttataag cagtatgaca gggaccattc tgggtctctg ggaagttctc agctgcgggg 601 agctctgcag gccgcaggct tccagctaaa tgaacaactt taccaaatga ttgtccgccg 661 gtatgctaat gaagatggag atatggattt taacaatttc atcagctgct tggtccgcct 721 ggatgccatg tttcgtgcct tcaagtctct ggatagagat agagatggcc tgattcaagt 781 gtctatcaaa gaatggctgc agttgaccat gtattcctga agtgggaact gagaagtcaa 841 gatcctccct ggaggacagg actgaaaacc ttgccaagct gtacacagtt gctgataccc 901 tgtgcaacag ctctcatttc ctggcaagct ctttcacaac cctacatatt tctgatcatg 961 tgctgccttt tactgctgaa ttaaaacaga tatttcacga aaaaaaaaaa aaaaaaaaaa 1021 aaaaaaaaa //