LOCUS BC005341 1607 bp mRNA linear HUM 03-OCT-2003
DEFINITION Homo sapiens LIM and senescent cell antigen-like domains 1, mRNA
(cDNA clone MGC:12432 IMAGE:3838632), complete cds.
ACCESSION BC005341
VERSION BC005341.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1607)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1607)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (27-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 16 Row: f Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13518025.
FEATURES Location/Qualifiers
source 1..1607
/db_xref="H-InvDB:HIT000032392"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12432 IMAGE:3838632"
/tissue_type="Bone marrow, acute myelogenous leukemia"
/clone_lib="NIH_MGC_55"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1607
/gene="LIMS1"
/gene_synonym="PINCH"
/gene_synonym="PINCH1"
/db_xref="GeneID:3987"
/db_xref="MIM:602567"
CDS 168..1145
/gene="LIMS1"
/gene_synonym="PINCH"
/gene_synonym="PINCH1"
/codon_start=1
/product="LIMS1 protein"
/protein_id="AAH05341.1"
/db_xref="GeneID:3987"
/db_xref="MIM:602567"
/translation="MANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQ
FPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFTIGRVIKAMNNSWHPECFRCDLCQE
VLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFN
CANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFV
CAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGGVVSALNKAWCVNCF
ACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK"
misc_feature 378..548
/gene="LIMS1"
/gene_synonym="PINCH"
/gene_synonym="PINCH1"
/note="LIM; Region: LIM domain. This family represents two
copies of the LIM structural domain"
/db_xref="CDD:pfam00412"
misc_feature 570..731
/gene="LIMS1"
/gene_synonym="PINCH"
/gene_synonym="PINCH1"
/note="LIM; Region: LIM domain. This family represents two
copies of the LIM structural domain"
/db_xref="CDD:pfam00412"
misc_feature 744..914
/gene="LIMS1"
/gene_synonym="PINCH"
/gene_synonym="PINCH1"
/note="LIM; Region: LIM domain. This family represents two
copies of the LIM structural domain"
/db_xref="CDD:pfam00412"
misc_feature 921..1079
/gene="LIMS1"
/gene_synonym="PINCH"
/gene_synonym="PINCH1"
/note="LIM; Region: LIM domain. This family represents two
copies of the LIM structural domain"
/db_xref="CDD:pfam00412"
BASE COUNT 498 a 311 c 380 g 418 t
ORIGIN
1 actcttgaat taagagaagg ggagctggag gtggctcagg tagagtgcgt aggtttgcag
61 aactgggcct gtgtgtgtaa agtgactaag gcaaaggagt ggaagtttga gagaagttta
121 agagaagaaa tggacatgat tgcctaaatc agccaaacac aggcaacatg gccaacgccc
181 tggccagcgc cacttgcgag cgctgcaagg gcggctttgc gcccgctgag aagatcgtga
241 acagtaatgg ggagctgtac catgagcagt gtttcgtgtg cgctcagtgc ttccagcagt
301 tcccagaagg actcttctat gagtttgaag gaagaaagta ctgtgaacat gactttcaga
361 tgctctttgc cccttgctgt catcagtgtg gtgaattcac cattggccga gttatcaaag
421 ccatgaataa cagctggcat ccggagtgct tccgctgtga cctctgccag gaagttctgg
481 cagatatcgg gtttgtcaag aatgctggga gacacctgtg tcgcccctgt cataatcgtg
541 agaaagccag aggccttggg aaatacatct gccagaaatg ccatgctatc atcgatgagc
601 agcctctgat attcaagaac gacccctacc atccagacca tttcaactgc gccaactgcg
661 ggaaggagct gactgccgat gcacgggagc tgaaagggga gctatactgc ctcccatgcc
721 atgataaaat gggggtcccc atctgtggtg cttgccgacg gcccatcgaa gggcgcgtgg
781 tgaacgctat gggcaagcag tggcatgtgg agcattttgt ttgtgccaag tgtgagaaac
841 cctttcttgg acatcgccat tatgagagga aaggcctggc atattgtgaa actcactata
901 accagctatt tggtgatgtt tgcttccact gcaatcgtgt tatagaaggt ggtgtggtct
961 ctgctcttaa taaggcctgg tgcgtgaact gctttgcctg ttctacctgc aacactaaat
1021 taacactcaa gaataagttt gtggagtttg acatgaagcc agtctgtaag aagtgctatg
1081 agaaatttcc attggagctg aagaaaagac ttaagaaact agctgagacc ttaggaagga
1141 aataagttcc tttatttttt cttttctatg caagataaga gattaccaac attacttgtc
1201 ttgatctacc catatttaaa gctatatctc aaagcagttg agagaagagg acctatatga
1261 atggttttat gtcatttttt taattaaaaa agaaaaattc atataatcgt gtttaaaaca
1321 caaatgaagt cagtatttgc ctttgttaac ccttatccat ttgttgacat gtagactgtt
1381 tacaaaaaaa aaacacatgg ttaaatgtta aattttaatt aaggccccca aaaattaaat
1441 ataacttttt aaaatgaaag gagtcacctt ttacatgact caggtgaaaa aacagtataa
1501 acattaattt actttgtgtt caaaagaaaa ttccaactgc tgttggggaa ggacacagaa
1561 aagaaaaata accacccaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa
//