LOCUS BC005312 1201 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens major histocompatibility complex, class II, DR beta 4, mRNA (cDNA clone MGC:12387 IMAGE:3933019), complete cds. ACCESSION BC005312 VERSION BC005312.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1201) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1201) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (27-MAR-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: CLONTECH cDNA Library Preparation: CLONTECH Laboratories, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 16 Row: d Column: 15 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 52630343. FEATURES Location/Qualifiers source 1..1201 /db_xref="H-InvDB:HIT000032366_03" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:12387 IMAGE:3933019" /tissue_type="Brain" /clone_lib="NIH_MGC_73" /lab_host="DH10B" /note="Vector: pDNR-LIB" gene 1..1201 /gene="HLA-DRB4" /gene_synonym="DRB4" /gene_synonym="HLA DRB1" /db_xref="GeneID:3126" /db_xref="HGNC:HGNC:4952" CDS 64..864 /gene="HLA-DRB4" /gene_synonym="DRB4" /gene_synonym="HLA DRB1" /codon_start=1 /product="major histocompatibility complex, class II, DR beta 4" /protein_id="AAH05312.1" /db_xref="GeneID:3126" /db_xref="HGNC:HGNC:4952" /translation="MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCEC HFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRA EVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRW FRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWS ARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS" BASE COUNT 284 a 310 c 323 g 284 t ORIGIN 1 atagttctcc ctgattgaga cttgcctgct gctgtgacca ctggtcttgt cctcttctcc 61 agcatggtgt gtctgaagct ccctggaggc tcctgtatgg cagcgctgac agtgacattg 121 acggtgctga gctccccact ggctttggct ggggacaccc aaccacgttt cttggagcag 181 gctaagtgtg agtgtcattt cctcaatggg acggagcgag tgtggaacct gatcagatac 241 atctataacc aagaggagta cgcgcgctac aacagtgacc tgggggagta ccaggcggtg 301 acggagctgg ggcggcctga cgctgagtac tggaacagcc agaaggacct cctggagcgg 361 aggcgggccg aggtggacac ctactgcaga tacaactacg gggttgtgga gagcttcaca 421 gtgcagcggc gagtccaacc taaggtgact gtgtatcctt caaagaccca gcccctgcag 481 caccacaacc tcctggtctg ctctgtgaat ggtttctatc caggcagcat tgaagtcagg 541 tggttccgga acggccagga agagaaggct ggggtggtgt ccacaggcct gatccagaat 601 ggagactgga ccttccagac cctggtgatg ctggaaacag ttcctcggag tggagaggtt 661 tacacctgcc aagtggagca tccaagcatg atgagccctc tcacggtgca atggagtgca 721 cggtctgaat ctgcacagag caagatgctg agtggagtcg ggggctttgt gctgggcctg 781 ctcttccttg ggacagggct gttcatctac ttcaggaatc agaaaggaca ctctggactt 841 cagccaacag gactcttgag ctgaagtgca gatgaccaca ttcaaggaag aaccttctgc 901 cccagctttg caagatgaaa agctttccca cttggctctt attcttccac aagagctttg 961 tcaggaccag gttgttactg gttcagcaac tctgcagaaa atgtcctccc ttgtggcttc 1021 cttagctcct gttcttggcc tgaagcctca cagctttgat ggcagtgcct catcttcaac 1081 ttttgtgctt ccctttacct aaactgtcct gcctcccgtg catctgtact ccccttgtgc 1141 cacacattgc attattaaat gtttctcaaa caaaaaaaaa aaaaaaaaaa aaaaaaaaaa 1201 a //