LOCUS BC005305 1809 bp mRNA linear HUM 16-SEP-2003
DEFINITION Homo sapiens collagen, type IV, alpha 6, mRNA (cDNA clone
IMAGE:3951220), complete cds.
ACCESSION BC005305
VERSION BC005305.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1809)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1809)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (27-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 16 Row: o Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 16357500
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1809
/db_xref="H-InvDB:HIT000032362"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3951220"
/tissue_type="Prostate"
/clone_lib="NIH_MGC_83"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1809
/gene="COL4A6"
/db_xref="GeneID:1288"
/db_xref="MIM:303631"
CDS 127..348
/gene="COL4A6"
/codon_start=1
/product="COL4A6 protein"
/protein_id="AAH05305.1"
/db_xref="GeneID:1288"
/db_xref="MIM:303631"
/translation="MLINKLWLLLVTLCLTEELAAAGEKSYGKPCGGQDCSGSCQCFP
EKGARHNLQLLNDMAGRLYHFSEVLPNLF"
BASE COUNT 577 a 318 c 404 g 510 t
ORIGIN
1 attagaaaca aattttggtc ggtgctccct gggctgctgg tcttctttac cttccagctg
61 ctcacagaac agagagtttc tacatacaag cagaagatgt gaaaatattg ggaataaata
121 aagtatatgc ttataaacaa gttgtggctg ctcctggtta cgttgtgcct gaccgaggaa
181 ctggcagcag cgggagagaa gtcttatgga aagccatgtg ggggccagga ctgcagtggg
241 agctgtcagt gttttcctga gaaaggagcg agacacaact tgcagctact gaatgatatg
301 gctggccggc tctaccattt cagtgaggtt ctgcctaatc tcttttgatt ctaaggggta
361 atgtggctca gccacagcaa ggaggctgag ttctgatgtt ctctttcccc atacttctat
421 ggaagactgg aagacagatt acttgcagtg atttctggag gcagaagata agcaagtggc
481 ctctatgatg gtagaaccaa gaaagaatga tcattgccct taagccttca gagatgacag
541 ctaaatccag agggaaaata aatagggata agattgtaaa aaaagttgct gctggagaaa
601 aaatagctgc tgctgataaa gaacctcaat aaattcaaac aatgtctgcg tttggccctc
661 aaatgtcatg ctggctcatt gctcgggaga aagagccgta caactaccat gtcagaggag
721 atgaggaagc aaagaagtct gactaagggc actgccatgg atattcttgc ccctgctttg
781 gaacaatcta tcattggatt gtggagagga agcaaggagg cagctggcag tgtgacacca
841 cgtgctatga ctcatgactg ttttgcctga tggttggcaa catagtattg gcacagttgt
901 gggctctaga gtacctgggc ctgaatctct attgatatgt gccatttggc aaatttctaa
961 actctaagtc ttagctgtct catatacaaa atgggcataa tacatcctcc ctcatatggt
1021 tgttgtgagg attaataaaa cagtgtttat aaagtgcttg gcacagtgct gaacacatag
1081 cagtaaataa atattagtca ttattaatat tagctgatgc acatttgggg gcaatttcaa
1141 gaaagaattg attacaatag taaattcaga ctatggcatc tattgattgt tcctttttaa
1201 atgaaccatt ttaaatacag taaaaaccct cctccctggc ctctgcttaa cttcctttat
1261 ggagtaagtc gatgtttttc cttcctattg gaatatacac tggccaatgc tcagggcaca
1321 atggaagctc atgggcaggt aagttacttc tggtgaacac ttatatttct gcttccacac
1381 aacaagttga tcacttacca aaagttagct gtgtttttgc caagcccatt tatggcagtt
1441 gtactcgtta ttacaagtag gtaatttaat gtaaatttgt gaaatatgag tataaaaaga
1501 aaactattat tttcatgaaa actaagttca atgctttgga aagacttact aaagaaaagt
1561 tgcttttgaa aactgccata ttgttaaaaa taaaacaaaa ctgaaagtgg aaatcaaatg
1621 tgatgcatta ggaatgtaac ttatgtgaaa aagagtctgt gaaatcccag ggtgtggcct
1681 cacgctcaaa gaaaaggcct tggccttaca acacatcacc agagtggtga atgaatgtac
1741 tttgtgtgtt ttaggttgaa ataaaatgtt ttatgtacca aaaaaaaaaa aaaaaaaaaa
1801 aaaaaaaaa
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