LOCUS BC005202 1589 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens nipsnap homolog 3B (C. elegans), mRNA (cDNA clone
MGC:12211 IMAGE:3933738), complete cds.
ACCESSION BC005202
VERSION BC005202.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1589)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1589)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 16 Row: h Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21361742.
FEATURES Location/Qualifiers
source 1..1589
/db_xref="H-InvDB:HIT000032287"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12211 IMAGE:3933738"
/tissue_type="Heart"
/clone_lib="NIH_MGC_74"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1589
/gene="NIPSNAP3B"
/gene_synonym="FLJ11275"
/db_xref="GeneID:55335"
/db_xref="HGNC:HGNC:23641"
/db_xref="MIM:608872"
CDS 34..777
/gene="NIPSNAP3B"
/gene_synonym="FLJ11275"
/codon_start=1
/product="nipsnap homolog 3B (C. elegans)"
/protein_id="AAH05202.1"
/db_xref="GeneID:55335"
/db_xref="HGNC:HGNC:23641"
/db_xref="MIM:608872"
/translation="MLVLRSGLTKALASRTLAPQVCSSFATGPRQYDGTFYEFRTYYL
KPSNMNAFMENLKKNIHLRTSYSELVGFWSVEFGGRTNKVFHIWKYDNFAHRAEVRKA
LANCKEWQEQSIIPNLARIDKQETEITYLIPWSKLEKPPKEGVYELAVFQMKPGGPAL
WGDAFERAINAHVNLGYTKVVGVFHTEYGELNRVHVLWWNESADSRAAGRHKSHEDPR
VVAAVRESVNYLVSQQNMLLIPASFSPLK"
BASE COUNT 477 a 264 c 295 g 553 t
ORIGIN
1 gctggctgct tttctcagtg ccgaagccgc gccatgctcg ttctcagaag cggcctgacc
61 aaggcgcttg cctcacggac gctcgcgcct caggtgtgtt catcttttgc tacgggccct
121 agacaatacg atggaacgtt ctatgaattt cgtacttatt accttaaacc ttcaaatatg
181 aatgcgttca tggaaaatct taagaaaaac attcatcttc ggacctctta ctctgaattg
241 gttggattct ggagtgtaga atttggaggc agaacgaata aagtgtttca tatttggaag
301 tatgataatt ttgctcatcg agctgaagtt cggaaagcct tagccaactg taaggaatgg
361 caagaacaat ctatcattcc aaatttggct cgcattgata aacaagagac ggaaattact
421 tacctgatac catggtccaa attagaaaag cctccaaaag aaggagtcta tgaactagct
481 gtttttcaga tgaaacctgg tgggccagct ctgtggggtg atgcatttga aagagcaatt
541 aatgcccatg tcaatttagg ctacacaaaa gtagttggtg ttttccacac agaatatgga
601 gaactcaaca gagttcatgt tctttggtgg aatgagagtg cagatagtcg tgcagctggg
661 agacataagt cccatgagga tcccagagtt gtggcggctg ttcgggaaag tgtcaactac
721 ctagtttctc agcagaatat gcttctgatt cctgcatcat tttcaccatt gaaatagttt
781 tctactgaaa tacaaaacat ttcattaact gctctaagat gtgtctgcta atggtgctta
841 aattctccca agaggttctc gcttttattt gaaggaggtg gtaagttaat tagttaattt
901 gctgtgcttc ttgcattttt gaaagttaca tattctccac tgctttaaga aataattcag
961 ttcactttca ccttggcatt tcagtatctg ttacacatta gaagtagttg tcactatttc
1021 atcatcttgg tttttcattt gttttagaat acctcttctg tattttgata actcattgct
1081 ttatagcatt ttcttttact caaataagga ttttacattt ccttgcctga cagtattttt
1141 gaattattta tataaaatat ctatcttttc atcatgtcta tagttcctga gattttaaaa
1201 aaatttgctt agtaaaggtt attttgtgat ataaaatggg atttataaaa atattagatt
1261 gtttatttct ttactgtgga aaagtagaat gtcatctgta ttaattattg cttttacatt
1321 cattgattat tagtcattct aacttggaaa ataatgcaat tgggtcacag tgttaaaaat
1381 ctagaaaaga cttgttggtt tatatgctga aattgttcat ttataattaa ttttactaat
1441 ttctccttag tttggatcac taacagagat cttgggacat ttatttgttt taaagaaata
1501 tttatggtta tggaaacgct tgccctaata aaaatcctgc atattcattg tttttttcga
1561 aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
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