LOCUS BC005116 2630 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens structure specific recognition protein 1, mRNA (cDNA
clone MGC:1608 IMAGE:3536048), complete cds.
ACCESSION BC005116
VERSION BC005116.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2630)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2630)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 8 Row: p Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 28416943.
FEATURES Location/Qualifiers
source 1..2630
/db_xref="H-InvDB:HIT000032220"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1608 IMAGE:3536048"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2630
/gene="SSRP1"
/gene_synonym="FACT"
/gene_synonym="FACT80"
/gene_synonym="T160"
/db_xref="GeneID:6749"
/db_xref="HGNC:HGNC:11327"
/db_xref="MIM:604328"
CDS 49..2178
/gene="SSRP1"
/gene_synonym="FACT"
/gene_synonym="FACT80"
/gene_synonym="T160"
/codon_start=1
/product="structure specific recognition protein 1"
/protein_id="AAH05116.1"
/db_xref="GeneID:6749"
/db_xref="HGNC:HGNC:11327"
/db_xref="MIM:604328"
/translation="MAETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQ
AGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDL
CVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSL
MEVRFYVPPTQEDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRI
YPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILL
FSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQG
HSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFARGTTTTRSFDFE
IETKQGTQYTFSSIEREEYGKLFDFVNAKKLNIKNRGLKEGMNPSYDEYADSDEDQHD
AYLERMKEEGKIREENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEG
DSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIK
SDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEGGRGESSKR
DKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESSSGENKSKKKR
RRSEDSEEEELASTPPSSEDSASGSDE"
BASE COUNT 741 a 615 c 720 g 554 t
ORIGIN
1 cttgtgcagc ctggggctct gcccaggcca ccacaggcag gggtcgacat ggcagagaca
61 ctggagttca acgacgtcta tcaggaggtg aaaggttcca tgaatgatgg tcgactgagg
121 ttgagccgtc agggcatcat cttcaagaat agcaagacag gcaaagtgga caacatccag
181 gctggggagt taacagaagg tatctggcgc cgtgttgctc tgggccatgg acttaaactg
241 cttacaaaga atggccatgt ctacaagtat gatggcttcc gagaatcgga gtttgagaaa
301 ctctctgatt tcttcaaaac tcactatcgc cttgagctaa tggagaagga cctttgtgtg
361 aagggctgga actgggggac agtgaaattt ggtgggcagc tgctttcctt tgacattggt
421 gaccagccag tctttgagat acccctcagc aatgtgtccc agtgcaccac aggcaagaat
481 gaggtgacac tggaattcca ccaaaacgat gacgcagagg tgtctctcat ggaggtgcgc
541 ttctacgtcc cacccaccca ggaggatggt gtggaccctg ttgaggcctt tgcccagaat
601 gtgttgtcaa aggcggatgt aatccaggcc acgggagatg ccatctgcat cttccgggag
661 ctgcagtgtc tgactcctcg tggtcgttat gacattcgga tctaccccac ctttctgcac
721 ctgcatggca agacctttga ctacaagatc ccctacacca cagtactgcg tctgtttttg
781 ttaccccaca aggaccagcg ccagatgttc tttgtgatca gcctggatcc cccaatcaag
841 caaggccaaa ctcgctacca cttcctgatc ctcctcttct ccaaggacga ggacatttcg
901 ttgactctga acatgaacga ggaagaagtg gagaagcgct ttgagggtcg gctcaccaag
961 aacatgtcag gatccctcta tgagatggtc agccgggtca tgaaagcact ggtaaaccgc
1021 aagatcacag tgccaggcaa cttccaaggg cactcagggg cccagtgcat tacctgttcc
1081 tacaaggcaa gctcaggact gctctacccg ctggagcggg gcttcatcta cgtccacaag
1141 ccacctgtgc acatccgctt cgatgagatc tcctttgtca actttgctcg tggtaccact
1201 actactcgtt cctttgactt tgaaattgag accaagcagg gcactcagta taccttcagc
1261 agcattgaga gggaggagta cgggaaactg tttgattttg tcaacgcgaa aaagctcaac
1321 atcaaaaacc gaggattgaa agagggcatg aacccaagct acgatgaata tgctgactct
1381 gatgaggacc agcatgatgc ctacttggag aggatgaagg aggaaggcaa gatccgggag
1441 gagaatgcca atgacagcag cgatgactca ggagaagaaa ccgatgagtc attcaaccca
1501 ggtgaagagg aggaagatgt ggcagaggag tttgacagca acgcctctgc cagctcctcc
1561 agtaatgagg gtgacagtga ccgggatgag aagaagcgga aacagctcaa aaaggccaag
1621 atggccaagg accgcaagag ccgcaagaag cctgtggagg tgaagaaggg caaagacccc
1681 aatgccccca agaggcccat gtctgcatac atgctgtggc tcaatgccag ccgagagaag
1741 atcaagtcag accatcctgg catcagcatc acggatcttt ccaagaaggc aggcgagatc
1801 tggaagggaa tgtccaaaga gaagaaagag gagtgggatc gcaaggctga ggatgccagg
1861 agggactatg aaaaagccat gaaagaatat gaagggggcc gaggcgagtc ttctaagagg
1921 gacaagtcaa agaagaagaa gaaagtaaag gtaaagatgg aaaagaaatc cacgccctct
1981 aggggctcat catccaagtc gtcctcaagg cagctaagcg agagcttcaa gagcaaagag
2041 tttgtgtcta gtgatgagag ctcttcggga gagaacaaga gcaaaaagaa gaggaggagg
2101 agcgaggact ctgaagaaga agaactagcc agtactcccc ccagctcaga ggactcagcg
2161 tcaggatccg atgagtagaa acggaggaag gttctctttg cgcttgcctt ctcacacccc
2221 ccgactcccc acccatattt tggtaccagt ttctcctcat gaaatgcagt ccctggattc
2281 tgtgccatct gaacatgctc tcctgttggt gtgtatgtca ctagggcagt ggggagacgt
2341 cttaactctg ctgcttccca aggatggctg tttataattt ggggagagat agggtgggag
2401 gcagggcaat gcaggatcca aatcctcatc ttactttccc gaccttaagg atgtagctgc
2461 tgcttgtcct gttcaagttg ctggagcagg ggtcatgtga ggccaggcct gtagctccta
2521 cctggggcct atttctactt tcattttgta tttctggtct gtgaaaatga tttaataaag
2581 ggaactgact ttggaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//