LOCUS BC005113 2904 bp mRNA linear HUM 20-DEC-2004 DEFINITION Homo sapiens SIN3 homolog B, transcription regulator (yeast), mRNA (cDNA clone IMAGE:4040380), partial cds. ACCESSION BC005113 VERSION BC005113.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2904) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2904) AUTHORS Director MGC Project. TITLE Direct Submission JOURNAL Submitted (26-MAR-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP/Gazdar cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield, Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin, Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu, Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 18 Row: o Column: 17 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis. FEATURES Location/Qualifiers source 1..2904 /db_xref="H-InvDB:HIT000086465" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4040380" /tissue_type="Lung, large cell carcinoma" /clone_lib="NIH_MGC_18" /lab_host="DH10B-R" /note="Vector: pOTB7" gene <1..2904 /gene="SIN3B" /gene_synonym="KIAA0700" /db_xref="GeneID:23309" /db_xref="MIM:607777" CDS <1..1265 /gene="SIN3B" /gene_synonym="KIAA0700" /codon_start=3 /product="SIN3B protein" /protein_id="AAH05113.1" /db_xref="GeneID:23309" /db_xref="MIM:607777" /translation="EEKGAFGDAPATEQPPLPPPAPHKPLDDVYSLFFANNNWYFFLR LHQTLCSRLLKIYRQAQKQLLEYRTEKEREKLLCEGRREKGSDPAMELRLKQPSEVEL EEYYPAFLDMVRSLLEGSIDPTQYEDTLREMFTIHAYVGFTMDKLVQNIARQLHHLVS DDVCLKVVELYLNEKKRGAAGGNLSSRCVRAARETSYQWKAERCMADENCFKVMFLQR KGQVIMTIELLDTEEAQTEDPVEVQHLARYVEQYVGTEGASSSPTEGFLLKPVFLQRN LKKFRRRWQSEQARALRGEARSSWKRLVGVESACDVDCRFKLSTHKMVFIVNSEDYMY RRGTLCRAKQVQPLVLLRHHQHFEEWHSRWLEDNVTVEAASLVQDWLMGEEDEDMVPC KTLCETVHVHGLPVTRYRVQYSRRPASP" BASE COUNT 566 a 908 c 869 g 561 t ORIGIN 1 cagaggagaa gggggccttc ggggatgccc cggccactga gcagccaccc ctgccgcccc 61 cagccccgca caagcccctg gacgatgtct acagcctatt ttttgccaac aacaactggt 121 acttcttcct gcgcctgcac cagaccctgt gctccaggct gctgaagatc taccgccagg 181 cgcagaagca gcttctggag tatcggaccg agaaggagcg ggagaagctg ctgtgtgagg 241 gccgcaggga gaagggcagc gaccccgcca tggagctgcg gctgaagcag cccagtgaag 301 tggagctgga ggagtactac ccggccttcc tggacatggt gcggagcctg ctggagggca 361 gcatcgaccc cacgcagtac gaggacaccc tacgcgagat gttcaccatc catgcctacg 421 tgggcttcac catggacaag ctggtgcaga acattgcgcg gcagctgcac cacctcgtga 481 gcgatgacgt ctgcctgaag gtggtggagc tctacctgaa cgagaagaag cggggtgccg 541 ctggtgggaa cctgtcctcc cgctgcgtcc gcgctgctag ggagaccagc taccagtgga 601 aggctgagcg ctgcatggcc gacgagaact gcttcaaggt gatgttcctg cagcgcaaag 661 ggcaggtgat catgaccatc gagctcctgg acaccgagga ggcccagacg gaggaccctg 721 tggaggtcca gcacctggct cggtacgtgg agcagtatgt ggggaccgag ggcgcgtcca 781 gctcgcccac tgagggcttc ctcctgaaac ctgtgttcct gcagaggaac ctcaagaagt 841 tccgccgccg gtggcagagc gagcaggcgc gggccctgcg cggtgaggcc aggagctcct 901 ggaagcggct ggtgggcgtg gagagcgcct gcgacgtgga ctgccgcttc aagctcagca 961 ctcacaagat ggtgttcatc gtgaactccg aggactacat gtaccgtcgc gggaccctct 1021 gccgggccaa gcaggtgcag cccctggtcc tgctccgcca ccaccagcac tttgaggagt 1081 ggcacagccg ctggctggag gacaatgtga cggtggaggc ggctagcctg gtgcaggact 1141 ggctgatggg tgaggaggac gaggacatgg taccctgcaa gacgctgtgt gagacagtgc 1201 acgtgcacgg cctgcccgtg acccgctacc gcgtgcagta cagccgccgc ccggcctcgc 1261 cctgacccgc cctcatgggc accgggcagg cgcctcacag agcacagacg tgccctcggc 1321 cttggtcgtg tcggggccgt tttcttgaac gacgtgagag gcatctccca gcccctctgc 1381 tgccggacag cgcactccag ggcaggacgc cgcccccgtg gctcccggtc tcctgtgggc 1441 ctgctgtgtg ccaaacctga gctacctgca cccgagccct ggggctcagc cccaccacag 1501 gggcgggtgg acgtgctggc cgaggaacaa gcaatcatgt ttgcgtcccc gtccgtcaca 1561 tgtgccaaat ccctggcagg cagatggctc ctgccccata ttcttgccgt gtcttggaaa 1621 agtcacaggt gacagccctc ctgaggccca cactttggag ggggtccatg tccaagagac 1681 cctgacaagg aaggagttga gccctgggta ggcttgcttg aaaagtgagt ccttccagaa 1741 tattctcaga gctgccagaa acatcatctg agggtttggg catcagctct gcctggctgg 1801 tgttcaggcc ctcagtcact ttggaagtga gaagaaccct tcagccaaac ctttgggatc 1861 ccattttgaa gtccagagct ggagcaggcg ggcagtgccc tgggagaccc cgctctggat 1921 aagacaccca accccaactc cagcagctgg actctgggcc cacaagggga gggaccccag 1981 ccagtattcc ctcagagccg gcacgaccct gctgtggggc ggcgggccca gtcgtgttcc 2041 tgcagtgggc accctaggcg tatgtgtata cacgcacaga tatttattcc tttcgctttt 2101 agtggttgtt atttctgtag cagccaagtc ctgcggctcc ctggggctga gatctccctt 2161 tgtggaactc cgagagccgc cctgacagtc ccagccgcca cccaaggagc cccatccgcc 2221 cacccaccct gggacccacg cggccactcc agggatcatt gttgtccttt tgtgaggggc 2281 tgaggcgact gtcccatgga ggcatccaag gctttctgtg ccaagaatcc caagtgactg 2341 gggctgggga ccacttctcc aggcctctct ccccgaccat gagagcccct ggccctggcc 2401 cctgcacacc agtaggccca gaataaccgc cacccttgcc atcctgcaac agctggactc 2461 aagtttccag gaagtggaga tgtgtttcta gaagtttcct gtggaacctg gaggctcctg 2521 atgcctttga ctccaggctg ggcgattccg atgctgaccc gtcctcctgg gctccccacc 2581 cccgctcccc aagtgtcaca caggcacttt gtacacatcc tggttttcta agaagggaac 2641 ttgccatcaa gattcctgta ccaggcccac ggccgtctcg ggcagagcca cctgggcccc 2701 gggtgcagcc ggagaccccg ccgagcccct cctcccagta ttcccatccc cgcatgcttc 2761 tagggagcgc ctcttttccg ttcttgagga atttctgttc tggggcttgt ccttcctttg 2821 cagctgtttt gaatgtagtt ttccttttct atttatttgc acattaaagt taataattga 2881 atattgaaaa aaaaaaaaaa aaaa //