LOCUS BC005097 4394 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens cytoplasmic FMR1 interacting protein 1, mRNA (cDNA
clone MGC:13167 IMAGE:3163591), complete cds.
ACCESSION BC005097
VERSION BC005097.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4394)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4394)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 18 Row: c Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 57013277.
FEATURES Location/Qualifiers
source 1..4394
/db_xref="H-InvDB:HIT000032213"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:13167 IMAGE:3163591"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..4394
/gene="CYFIP1"
/gene_synonym="P140SRA-1"
/gene_synonym="SHYC"
/db_xref="GeneID:23191"
/db_xref="HGNC:HGNC:13759"
/db_xref="MIM:606322"
CDS 53..3814
/gene="CYFIP1"
/gene_synonym="P140SRA-1"
/gene_synonym="SHYC"
/codon_start=1
/product="cytoplasmic FMR1 interacting protein 1"
/protein_id="AAH05097.1"
/db_xref="GeneID:23191"
/db_xref="HGNC:HGNC:13759"
/db_xref="MIM:606322"
/translation="MAAQVTLEDALSNVDLLEELPLPDQQPCIEPPPSSLLYQPNFNT
NFEDRNAFVTGIARYIEQATVHSSMNEMLEEGQEYAVMLYTWRSCSRAIPQVKCNEQP
NRVEIYEKTVEVLEPEVTKLMNFMYFQRNAIERFCGEVRRLCHAERRKDFVSEAYLIT
LGKFINMFAVLDELKNMKCSVKNDHSAYKRAAQFLRKMADPQSIQESQNLSMFLANHN
KITQSLQQQLEVISGYEELLADIVNLCVDYYENRMYLTPSEKHMLLKVMGFGLYLMDG
SVSNIYKLDAKKRINLSKIDKYFKQLQVVPLFGDMQIELARYIKTSAHYEENKSRWTC
TSSGSSPQYNICEQMIQIREDHMRFISELARYSNSEVVTGSGRQEAQKTDAEYRKLFD
LALQGLQLLSQWSAHVMEVYSWKLVHPTDKYSNKDCPDSAEEYERATRYNYTSEEKFA
LVEVIAMIKGLQVLMGRMESVFNHAIRHTVYAALQDFSQVTLREPLRQAIKKKKNVIQ
SVLQAIRKTVCDWETGHEPFNDPALRGEKDPKSGFDIKVPRRAVGPSSTQLYMVRTML
ESLIADKSGSKKTLRSSLEGPTILDIEKFHRESFFYTHLINFSETLQQCCDLSQLWFR
EFFLELTMGRRIQFPIEMSMPWILTDHILETKEASMMEYVLYSLDLYNDSAHYALTRF
NKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYKVMAGSLLLDKRLRSECKNQGATIHL
PPSNRYETLLKQRHVQLLGRSIDLNRLITQRVSAAMYKSLELAIGRFESEDLTSIVEL
DGLLEINRMTHKLLSRYLTLDGFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYC
YNGSTNRFVRTVLPFSQEFQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHF
QVICRLLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGSPGI
LEFFHHQLKDIVEYAELKTVCFQNLREVGNAILFCLLIEQSLSLEEVCDLLHAAPFQN
ILPRVHVKEGERLDAKMKRLESKYAPLHLVPLIERLGTPQQIAIAREGDLLTKERLCC
GLSMFEVILTRIRSFLDDPIWRGPLPSNGVMHVDECVEFHRLWSAMQFVYCIPVGTHE
FTVEQCFGDGLHWAGCMIIVLLGQQRRFAVLDFCYHLLKVQKHDGKDEIIKNVPLKKM
VERIRKFQILNDEIITILDKYLKSGDGEGTPVEHVRCFQPPIHQSLASS"
BASE COUNT 1130 a 1127 c 1134 g 1003 t
ORIGIN
1 aaactcccag ggcccgccca ggacccccaa gccgccgcgg acgcagccca ggatggcggc
61 ccaggtgact ctggaggacg cgctgtccaa cgtggacctc ctggaggagc tgcccctgcc
121 cgaccagcag ccctgcatcg agcccccgcc atcctcgctg ctctaccagc caaatttcaa
181 cactaacttt gaagacagaa atgcatttgt tactggcatc gcaagataca ttgaacaagc
241 caccgtccac tctagcatga acgagatgct ggaggagggc caagaatatg ctgtcatgct
301 gtacacctgg aggagctgct cccgggccat cccacaggtg aaatgtaacg agcagcctaa
361 cagagtggaa atctacgaga aaaccgtgga ggttctggag cctgaggtca caaaactgat
421 gaatttcatg tacttccaga gaaatgccat tgagcgtttc tgcggggaag tgaggcgcct
481 gtgccatgcc gagaggagga aggacttcgt gtcagaagcc tacctgatca cactgggcaa
541 attcatcaac atgttcgctg tgctggacga gctgaagaac atgaagtgca gtgtgaagaa
601 cgaccactca gcgtacaaga gggccgctca gtttttacgt aaaatggcag atccacagtc
661 catccaggaa tcgcagaatc tgtccatgtt cctggccaat cataacaaga tcacacagtc
721 tctgcagcag cagctcgaag tgatttctgg ctacgaagag ctcctggcag atattgtgaa
781 tctgtgtgtg gattactacg agaacaggat gtatttgacg cccagtgaga aacacatgct
841 tctcaaagtc atgggatttg gtctgtacct gatggatggg agtgtcagta acatctataa
901 gttggatgcc aagaaaagaa taaacttatc caaaatcgac aagtacttca agcaactcca
961 ggtggttcca ctatttgggg acatgcaaat agaactggca agatatatca agaccagcgc
1021 ccactacgag gaaaataaat ctcgatggac gtgcacatcc tccggcagca gccctcagta
1081 caacatctgc gagcagatga tccagatccg cgaggaccac atgcgcttca tttcggagct
1141 ggcgcgctac agcaacagcg aggtggtcac gggctcgggc cgccaggagg cccagaagac
1201 ggacgcggag taccgcaagc tcttcgacct ggcgctgcag ggcctgcagc tgttgtcgca
1261 gtggagcgcg cacgtgatgg aagtgtattc ctggaagctt gtgcacccca ccgacaagta
1321 ctccaacaag gactgccccg acagcgctga agagtacgag cgtgccacgc gctacaacta
1381 caccagcgag gagaagtttg ccctagtgga ggtgatcgcc atgatcaaag gcctgcaggt
1441 gctgatgggc aggatggaga gcgtgttcaa ccacgccatc cggcacaccg tctatgccgc
1501 actgcaggac ttctcccagg tgacccttag ggagccgctg cggcaggcca tcaagaagaa
1561 gaagaacgtc atccagagtg tcctgcaggc catcaggaag accgtgtgtg actgggagac
1621 ggggcatgag cccttcaatg acccagcctt gcggggcgag aaggacccca agagcggctt
1681 cgacataaaa gtaccacgcc gcgccgtggg accctccagc actcagcttt acatggtgag
1741 aaccatgcta gagtccctca ttgcagacaa aagtggttcc aagaaaacct tgagaagtag
1801 ccttgagggg cccaccatat tggacataga aaaatttcat cgagagtcat tcttctacac
1861 tcacttgata aatttcagtg aaacgctgca gcagtgctgt gacctttcgc agctgtggtt
1921 ccgagagttc ttcctggagc tgaccatggg caggaggatc cagttcccca ttgagatgtc
1981 gatgccctgg atcctgacgg accacatcct ggagaccaag gaggcatcga tgatggagta
2041 cgtgctctac tccctggacc tgtacaatga cagcgcccac tacgcgctca ccaggttcaa
2101 caagcagttc ctgtacgacg aaattgaggc cgaggtgaat ctatgttttg accaatttgt
2161 ttacaagcta gcagaccaga tatttgccta ttataaggtt atggcaggaa gtttgcttct
2221 tgataaacgg ttacgatcag aatgcaagaa tcagggagcc acgatccacc tcccgccgtc
2281 taaccgctac gagacgctgc tgaagcagag gcatgtgcag ctcctcggca gatcaataga
2341 cctcaatcgt ctgatcaccc agcgcgtctc agcagccatg tataagtccc tagaactggc
2401 gattggacga tttgaaagtg aagatttgac ctccatagtt gagctggatg gcctgttgga
2461 aatcaaccgc atgacccaca agctgctgag ccggtacctg acgctggacg gcttcgacgc
2521 catgttccgg gaggccaacc acaacgtgtc agcgccctac gggaggatca ccctgcacgt
2581 cttctgggag ctcaactatg acttcctgcc caactactgc tacaacggct ctaccaaccg
2641 gtttgttcgg acagtgttac cattttctca ggaatttcaa agagataagc agcctaatgc
2701 acagcctcag tatctgcatg gatccaaggc tttgaacttg gcctactcca gcatttacgg
2761 cagctaccgg aacttcgtgg gacctccaca ctttcaagtc atctgccggc ttctcggcta
2821 ccagggtatc gccgtggtca tggaggagct gctgaaggtc gtcaagagcc tgctgcaagg
2881 cacaatcctg cagtacgtga agacgctgat ggaggtgatg cccaagatct gccgcctgcc
2941 ccggcacgag tacggctctc ctggtatcct ggagttcttc caccaccagc tgaaggacat
3001 cgtggagtac gcagagctga agacggtgtg cttccagaac ctgcgggagg tggggaacgc
3061 catcctcttc tgcctgctca tcgagcagag cctgtcttta gaagaagtgt gtgacctgct
3121 gcacgcggct cctttccaga acatcttgcc gcgagtccat gtgaaagagg gggagagact
3181 tgatgccaaa atgaaaagac tagaatcaaa gtacgccccg ctgcatcttg tcccactgat
3241 tgaaagactg gggacccctc agcaaattgc catcgcaaga gagggggacc tgctgacaaa
3301 ggagcgcctc tgctgcggcc tgtccatgtt tgaggtcatc ctgacacgga tccggagctt
3361 tctggatgac cccatctggc gcgggcctct gcccagcaat ggggtcatgc atgtggacga
3421 gtgtgtggag tttcacagac tgtggagtgc catgcagttt gtctactgca ttcccgtggg
3481 gacacacgag ttcacagtcg agcagtgctt tggtgatggg ctacactggg ctggctgtat
3541 gatcatcgta cttcttgggc agcagcggcg ttttgctgtg ctggatttct gctaccatct
3601 acttaaagtc cagaaacatg atggcaaaga tgagattatt aaaaatgtgc ctttgaagaa
3661 gatggtggag agaattcgca agttccagat tctcaatgat gagatcatca ccatcctgga
3721 taagtacctg aagtcaggcg acggggaggg cacgccagtg gagcatgtgc gctgcttcca
3781 gccgcccatc caccagtccc tcgccagcag ctgagggcac gcgctgcact ccgtaactca
3841 acatggcatg cctttctctc cgtaaactat ttagtgagat ttttagggac tatttttcag
3901 tatctctgta cctgttaaag ggggtgcttt tcgatctaaa aacttaattt tataaaattg
3961 acttattttt ctagactaaa attgtatatg cttttggtaa ttaggaactc ttgagaatat
4021 tggctgctga ttgttgccat cacgttccta caaaattgtt tttctatggg atgttctggc
4081 agctgtgtca taaaatgctg ctgggttcat tcattcattc cataagaaac ttaataccag
4141 caaatgcatt aaatcccttg ccagttacca ttaactataa ctatttagct tttgtttagg
4201 gatctttctg atggtctttt atgagcaatc ttagttctaa gtcattgttc ccatcccttt
4261 tttgtgtgtt tcagaaaata gtgaacttga ttcccctgct tccactaaat ccagttgtga
4321 caaaatctaa cgtgacatca gatcgaaagg ttatagaaat aaaactaatg agatctaaaa
4381 aaaaaaaaaa aaaa
//