LOCUS BC005091 2311 bp mRNA linear HUM 06-JUN-2006
DEFINITION Homo sapiens HERPUD family member 2, mRNA (cDNA clone MGC:13079
IMAGE:3840918), complete cds.
ACCESSION BC005091
VERSION BC005091.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2311)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2311)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 18 Row: k Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31377616.
FEATURES Location/Qualifiers
source 1..2311
/db_xref="H-InvDB:HIT000032210"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:13079 IMAGE:3840918"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2311
/gene="HERPUD2"
/gene_synonym="FLJ22313"
/db_xref="GeneID:64224"
/db_xref="HGNC:HGNC:21915"
CDS 466..1686
/gene="HERPUD2"
/gene_synonym="FLJ22313"
/codon_start=1
/product="HERPUD2 protein"
/protein_id="AAH05091.1"
/db_xref="GeneID:64224"
/db_xref="HGNC:HGNC:21915"
/translation="MDQSGMEIPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNV
YPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLVCTSRTPPSSPKSSTNRE
SHEALTSSSNSSSDHSGSTTPSSGQETLSLAVGSSSEGLRQRTLPQAQTDQAQSHQFP
YVMQGNVDNQFPGQAAPPGFPVYPAFSPLQMLWWQQMYAHQYYMQYQAAVSAQATSNV
NPTQPTTSQPLNLAHVPGEEPPPAPNLVAQENRPMNENVQMNAQGGPVLNEEDFNRDW
LDWMYTFSRAAILLSIVYFYSSFSRFIMVMGAMLLVYLHQAGWFPFRQEGGHQQAPNN
NAEVNNDGQNANNLELEEMERLMDDGLEDESGEDGGEDASAIQRPGLMASAWSFITTF
FTSLIPEGPPQVAN"
BASE COUNT 611 a 588 c 544 g 568 t
ORIGIN
1 ccaccctgcg ctgtccagac tgaggggtca ggcggagagc cgggccgcgc ccttcggtca
61 gcttctctcc ctttcacccg cgcctcctcg cgagacccgg ggctgggccg tgcccgtcgc
121 cgcgcagcag gaagggagcg gctgccacgg aaaacgcctg gccggacgct tcctttctcc
181 tcacgacggc ctccacagtc cggagcccgg cggagcccgg acctggcggg gagagctgcc
241 tccacggccg ggcacccaga ccccaccgtc gcagtcgcca ccacctcagt ccatccttgg
301 taccggcaat gggcttcgta tcctccagtg cacttgtaac tgacttggac acggaatact
361 aagaactcac ttctgtcctc atcccagtcg cgccggcggt gaccatctcg gctcttttgg
421 gcttaactgc cgctcctctg gactctgtct gactttgggg gcaccatgga ccaaagtggg
481 atggagattc ctgtgaccct catcattaaa gcaccgaatc agaaatacag tgaccagact
541 attagctgct tcttgaactg gaccgtgggg aaactaaaaa cgcatctatc taacgtttac
601 cctagcaaac cattgacgaa ggatcagaga ttggtgtatt cgggcagact gcttcccgat
661 catctgcagc tgaaagacat tctcagaaaa caagatgagt atcatatggt tcatctagta
721 tgtacttctc ggactcctcc cagttctcca aaatccagca ccaatagaga aagtcatgaa
781 gcattgacat ccagcagcaa ttctagttca gatcattcag gatcaacaac tccatcatct
841 ggtcaagaaa ccttgtcttt agctgtgggt tcttcctcag aaggattgag gcagcgtacc
901 cttccacaag cacaaactga ccaagcacag agtcaccagt ttccatatgt aatgcaagga
961 aatgtagaca accaatttcc tgggcaagct gctccacctg gattcccagt gtatcccgcg
1021 tttagcccac tgcagatgct atggtggcaa cagatgtatg ctcatcagta ttatatgcag
1081 tatcaagctg cagtttcagc tcaggccaca tcaaatgtca acccaaccca gcctactact
1141 tcacagcctc taaatttggc acatgttcct ggagaagaac ccccaccagc tccaaaccta
1201 gtggcccaag aaaatcgacc catgaatgag aatgttcaaa tgaatgcaca gggaggtcca
1261 gtactaaatg aagaagactt caatcgagac tggctagact ggatgtacac gttctcacga
1321 gctgcgattc tccttagcat tgtatacttc tattcttctt ttagtcggtt tatcatggta
1381 atgggagcca tgctactggt ttatttacac caagctggat ggtttccttt taggcaagaa
1441 ggaggtcatc agcaggctcc caacaataat gccgaagtta acaatgatgg gcaaaatgca
1501 aacaacttgg aacttgaaga aatggagcgt cttatggatg atgggcttga agatgagagt
1561 ggagaagatg gaggtgaaga tgccagtgca attcaaaggc ctggattaat ggcttcagct
1621 tggtctttca tcaccacctt ctttacttca ctaataccag aggggcctcc ccaggttgcc
1681 aattgacctg aaaaactgtg ccagctacaa ggagggtctg acttcaggaa agtggtttaa
1741 ataacagtgc aatttcaaaa aaatttataa ctttcttttg atcatcatgt acagaggtgt
1801 tttttttctt taggcttctc atgcatatga atattttaag cacgaatgga ctactaaata
1861 tctgagtttt tttttttttt ttttaaagat cctaacagaa catagcgtaa caatattggt
1921 cttccaggtg ttactcattt caattatgtg tagtatacca ggacagacct attttcatgt
1981 cttatttctt taaagagctg cttcattggc cgggcgccat ggctcacgtc tgtaatccca
2041 gcactttggg aggccgaggc gggtgggtta cttgaggtca ggagttcgag accagcctgg
2101 caaacatggc gaaaccccat cttaactaaa aatacaaaaa aattagccgg gtgtggtgtc
2161 acgcgcctgt aatcccagct acttgggggg ctcaggcagg agaattgcct gaacccagga
2221 ggcggaggtt gcagtgagct gagattgggc cactgcactc caccctgggc gacagagtga
2281 gactcggtct cagaaaaaaa aaaaaaaaaa a
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