LOCUS BC005022 2065 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens sorting nexin 9, mRNA (cDNA clone MGC:12550
IMAGE:3832234), complete cds.
ACCESSION BC005022
VERSION BC005022.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2065)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2065)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 18 Row: k Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23111056.
FEATURES Location/Qualifiers
source 1..2065
/db_xref="H-InvDB:HIT000032163"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12550 IMAGE:3832234"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2065
/gene="SNX9"
/gene_synonym="MST155"
/gene_synonym="MSTP155"
/gene_synonym="SDP1"
/gene_synonym="SH3PX1"
/gene_synonym="SH3PXD3A"
/gene_synonym="WISP"
/db_xref="GeneID:51429"
/db_xref="HGNC:HGNC:14973"
/db_xref="MIM:605952"
CDS 172..1959
/gene="SNX9"
/gene_synonym="MST155"
/gene_synonym="MSTP155"
/gene_synonym="SDP1"
/gene_synonym="SH3PX1"
/gene_synonym="SH3PXD3A"
/gene_synonym="WISP"
/codon_start=1
/product="sorting nexin 9"
/protein_id="AAH05022.1"
/db_xref="GeneID:51429"
/db_xref="HGNC:HGNC:14973"
/db_xref="MIM:605952"
/translation="MATKARVMYDFAAEPGNNELTVNEGEIITITNPDVGGGWLEGRN
IKGERGLVPTDYVEILPSDGKDQFSCGNSVADQAFLDSLSASTAHASSSAASNNHQVG
SGNDPWSAWSASKSGNWESSEGWGAQPEGAGAQRNTNTPNNWDTAFGHPQAYQGPATG
DDDDWDEDWDGPKSSSYFKDSESADAGGAQRGNSRASSSSMKIPLNKFPGFAKPGTEQ
YLLAKQLAKPKEKIPIIVGDYGPMWVYPTSTFDCVVADPRKGSKMYGLKSYIEYQLTP
TNTNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEEFIKMRMERLQAW
MTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERDELAGVMIFSTMEPEAPDLDL
VEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFS
SSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIG
THKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSV
IRLYLEQQVQFYETIAEKLRQALSRFPVM"
BASE COUNT 601 a 491 c 544 g 429 t
ORIGIN
1 agcggctggg cctgagcgtc gagactcggg gccgaggcgg aggagcggcc gccgcgccgg
61 ggcccagccg gagccgccgc cctcgccctt gcctttgcct gcgcggctca gaatcaccat
121 ccgcggcgcg ggagacgagc cggccgtccc gggccggggg acccgcccgc catggccacc
181 aaggctcggg ttatgtatga ttttgctgct gaacctggaa ataatgaact gacggttaat
241 gaaggagaaa tcatcacaat cacaaatccg gatgtaggtg gaggatggct ggaaggaaga
301 aacatcaaag gagaacgagg gctggttccc acagactacg ttgaaatttt acccagtgat
361 ggaaaagatc aattttcttg tggaaattca gtggctgacc aagccttcct tgattctctc
421 tcagccagca cagctcacgc cagttcgtcg gctgccagca acaatcacca ggttggcagt
481 ggcaatgacc cctggtcagc ctggagtgcc tccaaatctg ggaactggga aagctcagaa
541 ggctgggggg cccagccaga gggggctgga gcccaaagaa acacaaacac tcccaacaac
601 tgggacactg ccttcggcca cccccaggcc taccaaggac cagcaactgg tgatgatgat
661 gactgggatg aagactggga tgggcccaaa tcctcttcct actttaagga ttcagagtca
721 gctgatgcag gcggcgctca gcgaggaaac agtcgtgcta gttcctcatc catgaaaatt
781 ccccttaaca aatttcctgg atttgcgaaa cctggcacgg aacagtattt gttggccaaa
841 caactagcaa aacccaaaga gaaaattccc atcattgttg gagattatgg cccaatgtgg
901 gtttatccta cctctacttt tgactgtgtg gtagcagatc ccaggaaagg ctccaaaatg
961 tatggtctaa agagctacat cgaatatcag ctaacaccta ctaacactaa tcgatctgta
1021 aaccacaggt ataagcactt tgactggtta tatgagcgtc tcctggttaa gtttgggtca
1081 gccattccaa tcccttctct tccagacaaa caagtcacag gccgctttga agaggaattt
1141 atcaaaatgc gcatggagag acttcaggcc tggatgacca ggatgtgtcg ccatccagta
1201 atctcagaaa gtgaagtttt ccagcagttc ctaaatttcc gagatgagaa ggaatggaaa
1261 actggaaaga ggaaggccga gagagatgag ctggcgggag tcatgatatt ttccaccatg
1321 gaaccagagg cacctgactt ggacttagta gaaatagagc agaagtgcga ggctgtgggg
1381 aagttcacca aggccatgga tgacggcgtg aaggagctgc tgacggtggg gcaggagcac
1441 tggaagcgct gcacgggccc attacccaag gaatatcaga agataggaaa ggccttgcag
1501 agtttggcca cagtgttcag ttccagtggc tatcaaggtg aaacagatct caatgatgca
1561 ataacagaag caggaaagac ttatgaagaa attgccagtc tcgtggcaga acagccaaag
1621 aaagatctcc atttcctgat ggaatgtaat cacgagtata aaggttttct tggctgcttc
1681 cctgacatca ttggcactca caagggagca atagaaaaag tgaaagaaag tgacaaacta
1741 gttgcaacaa gtaaaatcac cctacaagac aaacagaaca tggtgaagag agtcagcatc
1801 atgtcttacg cgttgcaagc tgagatgaat cactttcaca gtaaccggat ctatgattac
1861 aacagtgtca tccgcctgta cctggagcag caagtgcaat tttacgaaac gattgcagaa
1921 aagctgaggc aggccctcag ccgctttcca gtgatgtagg acagaacggg ccttgaagag
1981 aatgccgcgt gctttctcct gacttggggc aatgcaattc aaaacttttt ttcccctatt
2041 attcagaaaa aaaaaaaaaa aaaaa
//