LOCUS BC004979 1364 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens APEX nuclease (multifunctional DNA repair enzyme) 1, mRNA (cDNA clone MGC:3855 IMAGE:2905681), complete cds. ACCESSION BC004979 VERSION BC004979.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1364) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1364) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (21-MAR-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 9 Row: p Column: 2 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 18375500. FEATURES Location/Qualifiers source 1..1364 /db_xref="H-InvDB:HIT000032128" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:3855 IMAGE:2905681" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_20" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1364 /gene="APEX1" /gene_synonym="APE" /gene_synonym="APE1" /gene_synonym="APEN" /gene_synonym="APX" /gene_synonym="HAP1" /gene_synonym="REF-1" /gene_synonym="REF1" /db_xref="GeneID:328" /db_xref="HGNC:HGNC:587" /db_xref="MIM:107748" CDS 130..1086 /gene="APEX1" /gene_synonym="APE" /gene_synonym="APE1" /gene_synonym="APEN" /gene_synonym="APX" /gene_synonym="HAP1" /gene_synonym="REF-1" /gene_synonym="REF1" /codon_start=1 /product="APEX nuclease (multifunctional DNA repair enzyme) 1" /protein_id="AAH04979.1" /db_xref="GeneID:328" /db_xref="HGNC:HGNC:587" /db_xref="MIM:107748" /translation="MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPAL YEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSEN KLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVA EFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEI DLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSK NVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL" BASE COUNT 381 a 325 c 343 g 315 t ORIGIN 1 ccggtgcaga tacggggttg ctcttttgct cataagaggg gcttcgctgg cagtctgaac 61 ggcaacgcgg taaaaatatt gcttcggtgg gtgacgcggt acagctgccc aagggcgttc 121 gtaacgggaa tgccgaagcg tgggaaaaag ggagcggtgg cggaagacgg ggatgagctc 181 aggacagagc cagaggccaa gaagagtaag acggccgcaa agaaaaatga caaagaggca 241 gcaggagagg gcccagccct gtatgaggac cccccagatc agaaaacctc acccagtggc 301 aaacctgcca cactcaagat ctgctcttgg aatgtggatg ggcttcgagc ctggattaag 361 aagaaaggat tagattgggt aaaggaagaa gccccagata tactgtgcct tcaagagacc 421 aaatgttcag agaacaaact accagctgaa cttcaggagc tgcctggact ctctcatcaa 481 tactggtcag ctccttcgga caaggaaggg tacagtggcg tgggcctgct ttcccgccag 541 tgcccactca aagtttctta cggcataggc gatgaggagc atgatcagga aggccgggtg 601 attgtggctg aatttgactc gtttgtgctg gtaacagcat atgtacctaa tgcaggccga 661 ggtctggtac gactggagta ccggcagcgc tgggatgaag cctttcgcaa gttcctgaag 721 ggcctggctt cccgaaagcc ccttgtgctg tgtggagacc tcaatgtggc acatgaagaa 781 attgaccttc gcaaccccaa ggggaacaaa aagaatgctg gcttcacgcc acaagagcgc 841 caaggcttcg gggaattact gcaggctgtg ccactggctg acagctttag gcacctctac 901 cccaacacac cctatgccta caccttttgg acttatatga tgaatgctcg atccaagaat 961 gttggttggc gccttgatta ctttttgttg tcccactctc tgttacctgc attgtgtgac 1021 agcaagatcc gttccaaggc cctcggcagt gatcactgtc ctatcaccct atacctagca 1081 ctgtgacacc acccctaaat cactttgagc ctgggaaata agccccctca actaccattc 1141 cttctttaaa cactcttcag agaaatctgc attctatttc tcatgtataa aactaggaat 1201 cctccaacca ggctcctgtg atagagttct tttaagccca agatttttta tttgagggtt 1261 ttttgttttt taaaaaaaaa ttgaacaaag actactaatg actttgtttg aattatccac 1321 atgaaaataa agagccatag tttcaaaaaa aaaaaaaaaa aaaa //