LOCUS BC004936 865 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens stearoyl-CoA desaturase 5, mRNA (cDNA clone
IMAGE:3607979), complete cds.
ACCESSION BC004936
VERSION BC004936.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 865)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 865)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 13 Row: c Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13376362
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..865
/db_xref="H-InvDB:HIT000032097"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3607979"
/tissue_type="Uterus, endometrium adenocarcinoma"
/clone_lib="NIH_MGC_44"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..865
/gene="SCD5"
/gene_synonym="ACOD4"
/gene_synonym="FADS4"
/gene_synonym="FLJ21032"
/gene_synonym="HSCD5"
/gene_synonym="SCD2"
/db_xref="GeneID:79966"
/db_xref="HGNC:HGNC:21088"
/db_xref="MIM:608370"
CDS 220..618
/gene="SCD5"
/gene_synonym="ACOD4"
/gene_synonym="FADS4"
/gene_synonym="FLJ21032"
/gene_synonym="HSCD5"
/gene_synonym="SCD2"
/codon_start=1
/product="SCD5 protein"
/protein_id="AAH04936.1"
/db_xref="GeneID:79966"
/db_xref="HGNC:HGNC:21088"
/db_xref="MIM:608370"
/translation="MPGPATDAGKIPFCDAKEEIRAGLESSEGGGGPERPGARGQRQN
IVWRNVVLMSLLHLGAVYSLVLIPKAKPLTLLWAYFCFLLAALGVTAGAHRLWSHRSY
RAKLPLRIFLAVANSMAFQAAAEVVLTQMP"
BASE COUNT 195 a 270 c 234 g 166 t
ORIGIN
1 cgccagcaac agacgccggc cgccaagatc tgcatcccta ggccacgcta agaccctggg
61 gaagagcgca ggagcccggg agaagggctg gaaggagggg actggacgtg cggagaattc
121 ccccctaaaa ggcagaagcc cccgccccca ccctcgagct ccgctcgggc agagcgcctg
181 cctgcctgcc gctgctgcgg gcgcccacct cgcccagcca tgccaggccc ggccaccgac
241 gcggggaaga tccctttctg cgacgccaag gaagaaatcc gtgccgggct cgaaagctct
301 gagggcggcg gcggcccgga gaggccaggc gcgcgcgggc agcggcagaa catcgtctgg
361 aggaatgtcg tcctgatgag cttgctccac ttgggggccg tgtactccct ggtgctcatc
421 cccaaagcca agccactcac tctgctctgg gcctacttct gcttcctcct ggccgctctg
481 ggtgtgacag ctggtgccca tcgcttgtgg agccacaggt cctaccgggc caagctgcct
541 ctgaggatat ttctggctgt cgccaactcc atggctttcc aggcagcagc agaagtggtc
601 ctgacccaga tgccctgaca gcttttcctg gtgtgatttt ggaagttaac ccttgaacag
661 aatgggtttg aactgcgcag cttcacttaa atgcatggat tttcttctgc ctccaccacc
721 tctgagacag caagatcagc ccctcctcct ctcagcctac tcaatgcaaa gaagacaagg
781 atgaagacct ttatgatgat ccacttccac ttaatgaata gtaaatatat tttctcttct
841 taaaaaaaaa aaaaaaaaaa aaaaa
//