LOCUS BC004899 1679 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens sigma non-opioid intracellular receptor 1, mRNA (cDNA
clone MGC:3851 IMAGE:3529352), complete cds.
ACCESSION BC004899
VERSION BC004899.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1679)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1679)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 31, 2003 this sequence version replaced BC004899.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 11 Row: m Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22212932.
FEATURES Location/Qualifiers
source 1..1679
/db_xref="H-InvDB:HIT000032068"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3851 IMAGE:3529352"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1679
/gene="SIGMAR1"
/gene_synonym="SR-BP1"
/db_xref="GeneID:10280"
/db_xref="HGNC:HGNC:8157"
/db_xref="MIM:601978"
CDS 36..707
/gene="SIGMAR1"
/gene_synonym="SR-BP1"
/codon_start=1
/product="sigma non-opioid intracellular receptor 1"
/protein_id="AAH04899.1"
/db_xref="GeneID:10280"
/db_xref="HGNC:HGNC:8157"
/db_xref="MIM:601978"
/translation="MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQ
LARQYAGLDHELAFSRLIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSE
YVLLFGTALGSRGHSGRYWAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEAT
AVEWGPNTWMVEYGRGVIPSTLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYL
FGQDP"
BASE COUNT 394 a 496 c 444 g 345 t
ORIGIN
1 ctcctgagct gcgccgtgcc aggccgcccg ccgggatgca gtgggccgtg ggccggcggt
61 gggcgtgggc cgcgctgctc ctggctgtcg cagcggtgct gacccaggtc gtctggctct
121 ggctgggtac gcagagcttc gtcttccagc gcgaagagat agcgcagttg gcgcggcagt
181 acgctgggct ggaccacgag ctggccttct ctcgtctgat cgtggagctg cggcggctgc
241 acccaggcca cgtgctgccc gacgaggagc tgcagtgggt gttcgtgaat gcgggtggct
301 ggatgggcgc catgtgcctt ctgcacgcct cgctgtccga gtatgtgctg ctcttcggca
361 ccgccttggg ctcccgcggc cactcggggc gctactgggc tgagatctcg gataccatca
421 tctctggcac cttccaccag tggagagagg gcaccaccaa aagtgaggtc ttctacccag
481 gggagacggt agtacacggg cctggtgagg caacagctgt ggagtggggg ccaaacacat
541 ggatggtgga gtacggccgg ggcgtcatcc catccaccct ggccttcgcg ctggccgaca
601 ctgtcttcag cacccaggac ttcctcaccc tcttctatac tcttcgctcc tatgctcggg
661 gcctccggct tgagctcacc acctacctct ttggccagga cccttgacca gccaggcctg
721 aaggaagacc tgcggatgga caggagcggg caggcccgca catatccact tgctggagcc
781 catgtttaca gacagggaca tacaccatgc agatcctgag ttcctgctgt atgagcaggg
841 atatccatgc ttatgtatcc aaacacagag acccatggga acaaatgaga cacatataga
901 tactgagacc tgtgtgtaca gtaggaccat gcactcacac ccatctggag agggagcccc
961 cggtatacca agggagccag ttgtgttcag acacacacat cacagcttga ctcactaact
1021 gaggcctttc catagctcca cagcttccca cctcctcccc accaaaccgg ggttctagag
1081 ttaaggatgg gggagggtat tatactgcct cagtctgact cctcaaccca gcagcaattt
1141 gaggggatga gggggaagag gagctgcctt ttggaggccc ccttcacctg cagctatgat
1201 gcccttcccc ttctcccctg tcctcaccat atgccttatc cccattctac tcccctgcta
1261 tgcaagtgcc cctgtggctt gtccccaacc ccctcagcaa caaagctcag ctggggaacg
1321 agagtaattt gaagaatgct tgaagtcagc gtcttccatt ccagaaagac ccccattctt
1381 cctttggggg tatgatgtgg aagctggttt cagcccagga cccaccactg aggagaggat
1441 ctagacaggt gggcctaatt ccaaggggcc cttcctggcc tggagaaggc cttttacaca
1501 cacacaacac atacacacac acacacacac acacatatca cagttttcac acagcccctg
1561 ctgcattctc tgtccatctg tctgtttcta ttaataaaga tttgttgatc tgtaaaaaaa
1621 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
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