LOCUS BC004889 3102 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ubiquitin specific peptidase 5 (isopeptidase T), mRNA
(cDNA clone MGC:11219 IMAGE:3936781), complete cds.
ACCESSION BC004889
VERSION BC004889.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3102)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3102)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC004889.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 14 Row: d Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4507854.
FEATURES Location/Qualifiers
source 1..3102
/db_xref="H-InvDB:HIT000032062"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:11219 IMAGE:3936781"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3102
/gene="USP5"
/gene_synonym="ISOT"
/db_xref="GeneID:8078"
/db_xref="HGNC:HGNC:12628"
/db_xref="MIM:601447"
CDS 33..2540
/gene="USP5"
/gene_synonym="ISOT"
/codon_start=1
/product="ubiquitin specific peptidase 5 (isopeptidase T)"
/protein_id="AAH04889.1"
/db_xref="GeneID:8078"
/db_xref="HGNC:HGNC:12628"
/db_xref="MIM:601447"
/translation="MAELSEEALLSVLPTIRVPKAGDRVHKDECAFSFDTPESEGGLY
ICMNTFLGFGKQYVERHFNKTGQRVYLHLRRTRRPKEEDPATGTGDPPRKKPTRLAIG
VEGGFDLSEEKFELDEDVKIVILPDYLEIARDGLGGLPDIVRDRVTSAVEALLSADSA
SRKQEVQAWDGEVRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSIL
CGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGADVYSYDEDDMVLDPSLAEHL
SHFGIDMLKMQKTDKTMTELEIDMNQRIGEWELIQESGVPLKPLFGPGYTGIRNLGNS
CYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKP
VPESGDGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERN
CRSSENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEK
KRQAEEEKMALPELVRAQVPFSSCLEAYGAPEQVDDFWSTALQAKSVAVKTTRFASFP
DYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPDIAPPLVTP
DEPKAPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPL
ILPGSSGPGSTSAAADPPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHI
DDLDAEAAMDISEGRSAADSISESVPVGPKVRDGPGKYQLFAFISHMGTSTMCGHYVC
HIKKEGRWVIYNDQKVCASEKPPKDLGYIYFYQRVAS"
BASE COUNT 695 a 855 c 927 g 625 t
ORIGIN
1 ccgccgtgtg tggagaagct gctgccggtg tcatggcgga gctgagtgag gaggcgctgc
61 tgtcagtatt accgacgatc cgggtcccta aggctggaga ccgggtccac aaagacgagt
121 gcgccttctc cttcgacacg ccggagtctg aggggggcct ctacatctgt atgaacacgt
181 ttctgggctt tgggaaacag tatgtggaga gacatttcaa taagaccggc cagcgagtct
241 acttgcacct ccggcggacc cggcgcccga aagaggagga ccctgctaca ggcactggag
301 acccaccccg gaagaagccc acgcggctgg ctattggtgt tgaaggcgga tttgacctta
361 gcgaggagaa gtttgaatta gacgaggatg tgaagattgt cattttgcca gattacctgg
421 agattgcccg ggatggactg gggggactgc ctgacattgt cagagatcgg gtgaccagtg
481 cagtggaggc cctactgtcg gccgactcag cctcccgcaa gcaggaggtg caggcatggg
541 atggggaagt acggcaggtg tctaagcatg ccttcagcct caagcagttg gacaaccctg
601 ctcgaatccc tccctgtggc tggaagtgct ccaagtgtga catgagagag aacctgtggc
661 tcaacctgac tgatggctcc atcctctgtg ggcgacgcta cttcgatggc agtgggggca
721 acaaccacgc tgtggagcac taccgagaga caggctaccc gttagctgtc aagctgggca
781 ccatcacccc tgatggagct gacgtgtact catatgatga ggatgacatg gtcctggacc
841 ccagcctggc tgagcacctg tcccacttcg gcatcgacat gctgaagatg cagaagacag
901 acaagacgat gactgagttg gagatagaca tgaaccagcg gattggtgaa tgggagctga
961 tccaggagtc aggtgtgcca ctcaagcccc tgtttgggcc tggctacaca ggcatccgga
1021 acctgggtaa cagctgctac ctcaactctg tggtccaggt gctcttcagc atccctgact
1081 tccagaggaa gtatgtggat aagctggaga agatcttcca gaatgccccg acggacccta
1141 cccaggattt cagcacccag gtggccaagc tgggccatgg ccttctctcc ggggagtatt
1201 ccaagccagt accggagtcg ggcgatgggg agcgggtgcc agaacagaag gaagttcaag
1261 atggcattgc ccctcggatg ttcaaggccc tcatcggcaa gggccaccct gaattctcca
1321 ccaaccggca gcaggatgcc caggagttct tccttcacct tatcaacatg gtggagagga
1381 attgccggag ctctgaaaat cctaatgaag tgttccgctt cttggtggag gaaaagatca
1441 agtgcctggc cacagagaag gtgaagtaca cccagcgagt tgactacatc atgcagctgc
1501 ctgtgcccat ggatgcagcc cttaacaaag aggagcttct ggagtacgag gagaagaagc
1561 ggcaagccga agaggagaag atggcactgc cagaactggt tcgggcccag gtgcccttca
1621 gctcttgcct ggaggcctac ggggcccctg agcaggtcga tgacttctgg agcacggccc
1681 tgcaggccaa gtcagtagct gtcaagacca cacgatttgc ctcattccct gactacctgg
1741 tcatccagat caagaagttc accttcggct tagactgggt gcccaagaaa ctggatgtgt
1801 ccatcgagat gccagaggag ctcgacatct cccagttgag gggcacaggg ctgcagcccg
1861 gagaggagga gctgccagac attgccccac ccctggtcac tccggatgag cccaaagcgc
1921 ccatgctgga tgaatcagtc atcatccagc tggtggagat gggattccct atggacgcct
1981 gccgcaaagc tgtctactac acgggcaaca gcggggctga ggccgccatg aactgggtca
2041 tgtcacacat ggatgatcca gattttgcaa accccctcat cctgcctggc tctagtgggc
2101 cgggctccac aagcgcagca gccgaccccc ctcctgagga ctgtgtgacc accattgtct
2161 ccatgggctt ctcccgggac caggccttga aagcgctgcg ggccacgaac aatagtttag
2221 aacgggctgt ggactggatc ttcagtcaca ttgacgacct ggatgctgaa gctgccatgg
2281 acatctcaga gggccgctca gctgccgact ccatctctga gtctgtgcca gtgggaccta
2341 aagtccggga tggtcctgga aagtatcagc tctttgcctt cattagtcac atgggcacct
2401 ctaccatgtg tggtcactac gtctgccaca tcaagaaaga aggcagatgg gtgatctaca
2461 atgaccagaa agtgtgtgcc tccgagaagc cgcccaagga cctgggctac atctacttct
2521 accagagagt ggccagctaa gagcctgcct caccccttac caatgagggc aggggaagac
2581 cacctggcat gagggagagg ggctgaggga tggacttcag cccctctgct ctgtaccctt
2641 tttccttttg tccccggcag cagggaagaa gctggaggcc gtgggagaat ggctgggcag
2701 agcagagggg cagcgataga ctctggggat ggagcaggac ggggacggga ggggccggcc
2761 acctgtctgt aaggagactt tgttgcttcc cctgcccccg gaatccacag tgctctgctt
2821 ctctgtgtcg ccccgcccag ccccctggtg tggagggagg ggtctcgttt gtgcgcgtgg
2881 gtgtagcttt gtgcatcctc tcccagtgga gcgatcacct gtgcctcccc tccccctttg
2941 tttgcccctg tgtggttggt caaggaggga tgtgagggaa atagggaccc cccgacttgc
3001 cctcctgcct cagtctttcc cccaccctgt ctcttccttg tccttctctg gaaaatgcca
3061 aaatacacga tgtgaataaa agtaaaaaaa aaaaaaaaaa aa
//