LOCUS BC004881 2129 bp mRNA linear HUM 11-DEC-2003
DEFINITION Homo sapiens protein tyrosine phosphatase, non-receptor type 23,
mRNA (cDNA clone IMAGE:3831058), partial cds.
ACCESSION BC004881
VERSION BC004881.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2129)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2129)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC004881.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 14 Row: l Column: 5.
FEATURES Location/Qualifiers
source 1..2129
/db_xref="H-InvDB:HIT000032055"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3831058"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2129
/gene="PTPN23"
/gene_synonym="DKFZP564F0923"
/gene_synonym="HD-PTP"
/gene_synonym="HDPTP"
/gene_synonym="KIAA1471"
/db_xref="GeneID:25930"
/db_xref="MIM:606584"
CDS <1..1860
/gene="PTPN23"
/gene_synonym="DKFZP564F0923"
/gene_synonym="HD-PTP"
/gene_synonym="HDPTP"
/gene_synonym="KIAA1471"
/codon_start=1
/product="PTPN23 protein"
/protein_id="AAH04881.2"
/db_xref="GeneID:25930"
/db_xref="MIM:606584"
/translation="LYPGPAQDPLPAHSGALPFPSPGPPQPPHPPLAYGPAPSTRPMG
PQAAPLTIRGPSSAGQSTPSPHLVPSPAPSPGPGPVPPRPPAAEPPPCLRRGAAAADL
LSSSPESQHGGTQSPGGGQPLLQPTKVDAAEGRRPQALRLIERDPYEHPERLRQLQQE
LEAFRGQLGDVGALDTVWRELQDAQEHDARGRSIAIARCYSLKNRHQDVMPYDSNRVV
LRSGKDDYINASCVEGLSPYCPPLVATQAPLPGTAADFWLMVHEQKVSVIVMLVSEAE
MEKQKVARYFPTERGQPMVHGALSLALSSVRSTETHVERVLSLQFRDQSLKRSLVHLH
FPTWPELGLPDSPSNLLRFIQEVHAHYLHQRPLHTPIIVHCSSGVGRTGAFALLYAAV
QEVEAGNGIPELPQLVRRMRQQRKHMLQEKLHLRFCYEAVVRHVEQVLQRHGVPPPCK
PLASASISQKNHLPQDSQDLVLGGDVPISSIQATIAKLSIRPPGGLESPVASLPGPAE
PPGLPPASLPESTPIPSSSPPPLSSPLPEAPQPKEEPPVPEAPSSGPPSSSLELLASL
TPEAFSLDSSLRGKQRMSKHNFLQAHNGQGLRATRPSDDPLSLLDPLWTLNKT"
misc_feature 520..1311
/gene="PTPN23"
/gene_synonym="DKFZP564F0923"
/gene_synonym="HD-PTP"
/gene_synonym="HDPTP"
/gene_synonym="KIAA1471"
/note="PTPc; Region: Protein tyrosine phosphatase,
catalytic domain"
/db_xref="CDD:smart00194"
BASE COUNT 396 a 758 c 568 g 407 t
ORIGIN
1 ctctacccag gtcccgctca agaccctctg ccagcccact caggggctct gcctttcccc
61 agccctgggc cccctcagcc tccccatccc ccactggcat atggtcctgc cccttctacc
121 agacccatgg gcccccaggc agcccctctt accattcgag ggccctcgtc tgctggccag
181 tccaccccta gtccccacct ggtgccttca cctgccccat ctccagggcc tggtccggta
241 ccccctcgcc ccccagcagc agaaccaccc ccttgcctgc gccgaggcgc cgcagctgca
301 gacctgctct cctccagccc ggagagccag catggcggca ctcagtctcc tgggggtggg
361 cagcccctgc tgcagcccac caaggtggat gcagctgagg gtcgtcggcc gcaggccctg
421 cggctgattg agcgggaccc ctatgaacat cctgagaggc tgcggcagtt gcagcaggag
481 ctggaggcct ttcggggtca gctgggggat gtgggagctc tggacactgt ctggcgagag
541 ctgcaagatg cgcaggaaca tgatgcccga ggccgttcca tcgccattgc ccgctgctac
601 tcactgaaga accggcacca ggatgtcatg ccctatgaca gtaaccgtgt ggtgctgcgc
661 tcaggcaagg atgactacat caatgccagc tgcgtggagg ggctctcccc atactgcccc
721 ccgctagtgg caacccaggc cccactgcct ggcacagctg ctgacttctg gctcatggtc
781 catgagcaga aagtgtcagt cattgtcatg ctggtttctg aggctgagat ggagaagcaa
841 aaagtggcac gctacttccc caccgagagg ggccagccca tggtgcacgg tgccctgagc
901 ctggcattga gcagcgtccg cagcaccgaa acccatgtgg agcgcgtgct gagcctgcag
961 ttccgagacc agagcctcaa gcgctctctt gtgcacctgc acttccccac ttggcctgag
1021 ttaggcctgc ccgacagccc cagcaacttg ctgcgcttca tccaggaggt gcacgcacat
1081 tacctgcatc agcggccgct gcacacgccc atcattgtgc actgcagctc tggtgtgggc
1141 cgcacgggag cctttgcact gctctatgca gctgtgcagg aggtggaggc tgggaacgga
1201 atccctgagc tgcctcagct ggtgcggcgc atgcggcagc agagaaagca catgctgcag
1261 gagaagctgc acctcaggtt ctgctatgag gcagtggtga gacacgtgga gcaggtcctg
1321 cagcgccatg gtgtgcctcc tccatgcaaa cccttggcca gtgcaagcat cagccagaag
1381 aaccaccttc ctcaggactc ccaggacctg gtcctcggtg gggatgtgcc catcagctcc
1441 atccaggcca ccattgccaa gctcagcatt cggcctcctg gggggttgga gtccccggtt
1501 gccagcttgc caggccctgc agagccccca ggcctcccgc cagccagcct cccagagtct
1561 accccaatcc catcttcctc cccacccccc ctttcctccc cactacctga ggctccccag
1621 cctaaggagg agccgccagt gcctgaagcc cccagctcgg ggcccccctc ctcctccctg
1681 gaattgctgg cctccttgac cccagaggcc ttctccctgg acagctccct gcggggcaaa
1741 cagcggatga gcaagcataa ctttctgcag gcccataacg ggcaagggct gcgggccacc
1801 cggccctctg acgaccccct cagccttctg gatccactct ggacactcaa caagacctga
1861 acaggttttg cctacctggt ccttacacta catcatcatc atctcatgcc cacctgccca
1921 cacccagcag agcttctcag tgggcacagt ctcttactcc catttctgct gcctttggcc
1981 ctgcctggcc cagcctgcac ccctgtgggg tggaaatgta ctgcaggctc tgggtcaggt
2041 tctgctcctt tatgggaccc gacatttttc agctctttgc tattgaaata ataaaccacc
2101 ctgttctgtg aaaaaaaaaa aaaaaaaaa
//