LOCUS BC004535 1536 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens zinc finger, DHHC-type containing 16, mRNA (cDNA clone
MGC:2993 IMAGE:3160750), complete cds.
ACCESSION BC004535
VERSION BC004535.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1536)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1536)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC004535.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 4 Row: h Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 37594448.
FEATURES Location/Qualifiers
source 1..1536
/db_xref="H-InvDB:HIT000032009"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2993 IMAGE:3160750"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1536
/gene="ZDHHC16"
/gene_synonym="APH2"
/gene_synonym="MGC2993"
/db_xref="GeneID:84287"
/db_xref="HGNC:HGNC:20714"
CDS 150..1040
/gene="ZDHHC16"
/gene_synonym="APH2"
/gene_synonym="MGC2993"
/codon_start=1
/product="zinc finger, DHHC-type containing 16"
/protein_id="AAH04535.1"
/db_xref="GeneID:84287"
/db_xref="HGNC:HGNC:20714"
/translation="MRGQRSLLLGPARLCLRLLLLLGYRRRCPPLLRGLVQRWRYGKV
CLRSLLYNSFGGSDTAVDAAFEPVYWLVDNVIRWFGVGRNDIATVSICKKCIYPKPAR
THHCSICNRCVLKMDHHCPWLNNCVGHYNHRYFFSFCFFMTLGCVYCSYGSWDLFREA
YAAIETYHQTPPPTFSFRERMTHKSLVYLWFLCSSVALALGALTVWHAVLISRGETSI
ERHINKKERRRLQAKGRVFRNPYNYGCLDNWKVFLGVDTGRHWLTRVLLPSSHLPHGN
GMSWEPPPWVTAHSASVMAV"
BASE COUNT 336 a 425 c 421 g 354 t
ORIGIN
1 gctgcctggc gctgcgggcg gcgggccatg gtggtttgga ttgagccggg cccggccggg
61 gcgccgagtc ggagggggtg gcagtgagcg gcggcagagg ctacggggct cggtttggct
121 gactggggag tcggcaggcg gcaggaacca tgcgaggcca gcggagcctg ctgctgggcc
181 cggcccgcct ctgcctccgc ctccttctgc tgctgggtta caggcgccgc tgtccacctc
241 tactccgggg tctagtacag cgctggcgct acggcaaggt ctgcctgcgc tccctgctct
301 acaactcctt tgggggcagt gacaccgctg ttgatgctgc ctttgagcct gtctactggc
361 tggtagacaa cgtgatccgc tggtttggag tgggcaggaa tgatatcgcc accgtctcca
421 tctgtaagaa gtgcatttac cccaagccag cccgaacaca ccactgcagc atctgcaaca
481 ggtgtgtgct gaagatggat caccactgcc cctggctaaa caattgtgtg ggccactata
541 accatcggta cttcttctct ttctgctttt tcatgactct gggctgtgtc tactgcagct
601 atggaagttg ggaccttttc cgggaggctt atgctgccat tgagacttat caccagaccc
661 caccacccac cttctccttt cgagaaagga tgactcacaa gagtcttgtc tacctctggt
721 tcctgtgcag ttctgtggca cttgccctgg gtgccctaac tgtatggcat gctgttctca
781 tcagtcgagg tgagactagc atcgaaaggc acatcaacaa gaaggagaga cgtcggctac
841 aggccaaggg cagagtattt aggaatcctt acaactacgg ctgcttggac aactggaagg
901 tattcctggg tgtggataca ggaaggcact ggcttactcg ggtgctctta ccttctagtc
961 acttgcccca tgggaatgga atgagctggg agccccctcc ctgggtgact gctcactcag
1021 cctctgtgat ggcagtgtga gctggactgt gtcagccacg actcgagcac tcattctgct
1081 ccctatgtta tttcaagggc ctccaagggc agcttttctc agaatccttg atcaaaaaga
1141 gccagtgggc ctgccttagg gtaccatgca ggacaattca aggaccagcc tttttaccac
1201 tgcagaagaa agacacaatg tggagaaatc ttaggactga catcccttta ctcaggcaaa
1261 cagaagttcc aaccccagac taggggtcag gcagctagct acctaccttg cccagtgctg
1321 acccggacct cctccaggat acagcactgg agttggccac cacctcttct acttgctgtc
1381 tgaaaaaaca cctgactagt acagctgaga tcttggcttc tcaacagggc aaagatacca
1441 ggcctgctgc tgaggtcact gccacttctc acatgctgct taagggagca caaataaagg
1501 tattcgattt ttaaagataa aaaaaaaaaa aaaaaa
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