LOCUS       BC004478                1332 bp    mRNA    linear   HUM 16-SEP-2003
DEFINITION  Homo sapiens collagen, type XVII, alpha 1, mRNA (cDNA clone
            IMAGE:3688634), partial cds.
ACCESSION   BC004478
VERSION     BC004478.2
KEYWORDS    .
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1332)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 1332)
  AUTHORS   Strausberg,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAR-2001) National Institutes of Health, Mammalian
            Gene Collection (MGC), Cancer Genomics Office, National Cancer
            Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
            USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     On Aug 19, 2003 this sequence version replaced BC004478.1.
            Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: ATCC
            cDNA Library Preparation: Rubin Laboratory
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Institute for Systems Biology
            http://www.systemsbiology.org
            contact: amadan@systemsbiology.org
            Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
            Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAL Plate: 14 Row: i Column: 17
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 18641353.
FEATURES             Location/Qualifiers
     source          1..1332
                     /db_xref="H-InvDB:HIT000086371"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="IMAGE:3688634"
                     /tissue_type="Pancreas, adenocarcinoma"
                     /clone_lib="NIH_MGC_39"
                     /lab_host="DH10B-R"
                     /note="Vector: pOTB7"
     gene            1..>1332
                     /gene="COL17A1"
                     /gene_synonym="BA16H23.2"
                     /gene_synonym="BP180"
                     /gene_synonym="BPAG2"
                     /gene_synonym="LAD-1"
                     /db_xref="GeneID:1308"
                     /db_xref="MIM:113811"
     CDS             152..>1332
                     /gene="COL17A1"
                     /gene_synonym="BA16H23.2"
                     /gene_synonym="BP180"
                     /gene_synonym="BPAG2"
                     /gene_synonym="LAD-1"
                     /codon_start=1
                     /product="COL17A1 protein"
                     /protein_id="AAH04478.1"
                     /db_xref="GeneID:1308"
                     /db_xref="MIM:113811"
                     /translation="MDVTKKNKRDGTEVTERIVTETVTTRLTSLPPKGGTSNGYAKTA
                     SLGGGSRLEKQSLTHGSSGYINSTGSTRGHASTSSYRRAHSPASTLPNSPGSTFERKT
                     HVTRHAYEGSSSGNSSPEYPRKEFASSSTRGRSQTRESEIRVRLQSASPSTRWTELDD
                     VKRLLKGSRSASVSPTRNSSNTLPIPKKGTVETKIVTASSQSVSGTYDAMILDANLPS
                     HVWSSTLPAGSSMGTYHNNMTTQSSSLLNTNAYSAGSVFGVPNNMASCSPTLHPGLST
                     SSSVFGMQNNLAPSLTTLSHGTTTTSTAYGVKKNMPQSPAAVNTGVSTSAACTTSVQS
                     DDLLHKDCKFLILEKDNTPAKKEMELLIMTKDSGKVFTASPASIAATSFSEDTLKKKK
                     K"
BASE COUNT          385 a          389 c          299 g          259 t
ORIGIN      
        1 ctcagcttta acacaccttg gctgggtctg gataaaaaaa aagtgagcac tgcaaatttc
       61 tagaagaaaa catcaggaga agaaagagag agggggattt attcaaagtt gtttccaatt
      121 ccttcaaaac ctcaaaccag gtggctatgg tatggatgta accaagaaaa acaaacgaga
      181 tggaactgaa gtcactgaga gaattgtcac tgaaacagta accacaagac ttacatcctt
      241 accaccaaaa ggcgggacca gcaatggcta tgctaaaaca gcctctcttg gtggagggag
      301 ccggctggag aaacaaagcc tgactcatgg cagcagcggc tacataaact caactggaag
      361 cacacgaggc catgcctcca cctctagtta caggagggct cactcacctg cctccactct
      421 gcccaactcc ccaggctcaa cctttgaaag gaaaactcac gttacccgcc atgcgtatga
      481 agggagctcc agtggcaact cttctccgga gtaccctcgg aaggaatttg catcttcttc
      541 aaccagagga cggagtcaaa cacgagagag tgaaattcga gttcgactgc agagtgcgtc
      601 cccatccacc cgatggacag aattggatga tgttaagcgt ttgctcaagg ggagtcgatc
      661 ggcaagtgtg agccccaccc ggaattcctc caacacactc cccatcccca agaaaggcac
      721 tgtggagacc aaaattgtga cagcgagctc ccagtcggtg tcaggcacct acgatgcaat
      781 gatcctggat gccaaccttc cctcccatgt gtggtcctcc accctgcccg cggggtcctc
      841 catggggacc tatcacaaca acatgacaac ccagagctca tccctcctca acaccaatgc
      901 ctactctgcg ggatcagtct tcggagttcc aaacaacatg gcgtcctgct cacccacttt
      961 gcaccctgga ctcagcacat cctcctcagt gtttggcatg cagaacaatc tggcccccag
     1021 cttgaccacc ctgtcccatg gcaccaccac cacttccaca gcatatgggg tgaagaaaaa
     1081 catgccccag agtcctgcgg ctgtgaacac tggcgtttcc acctccgccg cctgcaccac
     1141 aagtgtgcag agcgatgacc ttttgcacaa ggactgcaag ttcctgatcc tagagaaaga
     1201 caacacacct gctaagaagg agatggagct gctcatcatg accaaggaca gcgggaaggt
     1261 ctttacagcc tcccctgcca gcatcgctgc aacttctttt tcagaagaca ccctaaaaaa
     1321 aaaaaaaaaa aa
//