LOCUS BC004478 1332 bp mRNA linear HUM 16-SEP-2003 DEFINITION Homo sapiens collagen, type XVII, alpha 1, mRNA (cDNA clone IMAGE:3688634), partial cds. ACCESSION BC004478 VERSION BC004478.2 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1332) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1332) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (12-MAR-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 19, 2003 this sequence version replaced BC004478.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 14 Row: i Column: 17 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 18641353. FEATURES Location/Qualifiers source 1..1332 /db_xref="H-InvDB:HIT000086371" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:3688634" /tissue_type="Pancreas, adenocarcinoma" /clone_lib="NIH_MGC_39" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..>1332 /gene="COL17A1" /gene_synonym="BA16H23.2" /gene_synonym="BP180" /gene_synonym="BPAG2" /gene_synonym="LAD-1" /db_xref="GeneID:1308" /db_xref="MIM:113811" CDS 152..>1332 /gene="COL17A1" /gene_synonym="BA16H23.2" /gene_synonym="BP180" /gene_synonym="BPAG2" /gene_synonym="LAD-1" /codon_start=1 /product="COL17A1 protein" /protein_id="AAH04478.1" /db_xref="GeneID:1308" /db_xref="MIM:113811" /translation="MDVTKKNKRDGTEVTERIVTETVTTRLTSLPPKGGTSNGYAKTA SLGGGSRLEKQSLTHGSSGYINSTGSTRGHASTSSYRRAHSPASTLPNSPGSTFERKT HVTRHAYEGSSSGNSSPEYPRKEFASSSTRGRSQTRESEIRVRLQSASPSTRWTELDD VKRLLKGSRSASVSPTRNSSNTLPIPKKGTVETKIVTASSQSVSGTYDAMILDANLPS HVWSSTLPAGSSMGTYHNNMTTQSSSLLNTNAYSAGSVFGVPNNMASCSPTLHPGLST SSSVFGMQNNLAPSLTTLSHGTTTTSTAYGVKKNMPQSPAAVNTGVSTSAACTTSVQS DDLLHKDCKFLILEKDNTPAKKEMELLIMTKDSGKVFTASPASIAATSFSEDTLKKKK K" BASE COUNT 385 a 389 c 299 g 259 t ORIGIN 1 ctcagcttta acacaccttg gctgggtctg gataaaaaaa aagtgagcac tgcaaatttc 61 tagaagaaaa catcaggaga agaaagagag agggggattt attcaaagtt gtttccaatt 121 ccttcaaaac ctcaaaccag gtggctatgg tatggatgta accaagaaaa acaaacgaga 181 tggaactgaa gtcactgaga gaattgtcac tgaaacagta accacaagac ttacatcctt 241 accaccaaaa ggcgggacca gcaatggcta tgctaaaaca gcctctcttg gtggagggag 301 ccggctggag aaacaaagcc tgactcatgg cagcagcggc tacataaact caactggaag 361 cacacgaggc catgcctcca cctctagtta caggagggct cactcacctg cctccactct 421 gcccaactcc ccaggctcaa cctttgaaag gaaaactcac gttacccgcc atgcgtatga 481 agggagctcc agtggcaact cttctccgga gtaccctcgg aaggaatttg catcttcttc 541 aaccagagga cggagtcaaa cacgagagag tgaaattcga gttcgactgc agagtgcgtc 601 cccatccacc cgatggacag aattggatga tgttaagcgt ttgctcaagg ggagtcgatc 661 ggcaagtgtg agccccaccc ggaattcctc caacacactc cccatcccca agaaaggcac 721 tgtggagacc aaaattgtga cagcgagctc ccagtcggtg tcaggcacct acgatgcaat 781 gatcctggat gccaaccttc cctcccatgt gtggtcctcc accctgcccg cggggtcctc 841 catggggacc tatcacaaca acatgacaac ccagagctca tccctcctca acaccaatgc 901 ctactctgcg ggatcagtct tcggagttcc aaacaacatg gcgtcctgct cacccacttt 961 gcaccctgga ctcagcacat cctcctcagt gtttggcatg cagaacaatc tggcccccag 1021 cttgaccacc ctgtcccatg gcaccaccac cacttccaca gcatatgggg tgaagaaaaa 1081 catgccccag agtcctgcgg ctgtgaacac tggcgtttcc acctccgccg cctgcaccac 1141 aagtgtgcag agcgatgacc ttttgcacaa ggactgcaag ttcctgatcc tagagaaaga 1201 caacacacct gctaagaagg agatggagct gctcatcatg accaaggaca gcgggaaggt 1261 ctttacagcc tcccctgcca gcatcgctgc aacttctttt tcagaagaca ccctaaaaaa 1321 aaaaaaaaaa aa //