LOCUS BC004383 3057 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens polypyrimidine tract binding protein 1, mRNA (cDNA
clone MGC:10830 IMAGE:3615251), complete cds.
ACCESSION BC004383
VERSION BC004383.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3057)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3057)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 13 Row: l Column: 5.
FEATURES Location/Qualifiers
source 1..3057
/db_xref="H-InvDB:HIT000031907"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10830 IMAGE:3615251"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3057
/gene="PTBP1"
/gene_synonym="HNRNPI"
/gene_synonym="HNRPI"
/gene_synonym="MGC10830"
/gene_synonym="MGC8461"
/gene_synonym="pPTB"
/gene_synonym="PTB-1"
/gene_synonym="PTB-T"
/gene_synonym="PTB2"
/gene_synonym="PTB3"
/gene_synonym="PTB4"
/db_xref="GeneID:5725"
/db_xref="HGNC:HGNC:9583"
/db_xref="MIM:600693"
CDS 17..1612
/gene="PTBP1"
/gene_synonym="HNRNPI"
/gene_synonym="HNRPI"
/gene_synonym="MGC10830"
/gene_synonym="MGC8461"
/gene_synonym="pPTB"
/gene_synonym="PTB-1"
/gene_synonym="PTB-T"
/gene_synonym="PTB2"
/gene_synonym="PTB3"
/gene_synonym="PTB4"
/codon_start=1
/product="polypyrimidine tract binding protein 1"
/protein_id="AAH04383.1"
/db_xref="GeneID:5725"
/db_xref="HGNC:HGNC:9583"
/db_xref="MIM:600693"
/translation="MDGIVPDIAVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDS
KKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMN
TEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSG
NLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK
NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYT
RPDLPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGA
GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMS
HLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIF
PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQAL
IDLHNHDLGENHHLRVSFSKSTI"
BASE COUNT 688 a 935 c 803 g 631 t
ORIGIN
1 gtctgctctg tgtgccatgg acggcattgt cccagatata gccgttggta caaagcgggg
61 atctgacgag cttttctcta cttgtgtcac taacggaccg tttatcatga gcagcaactc
121 ggcttctgca gcaaacggaa atgacagcaa gaagttcaaa ggtgacagcc gaagtgcagg
181 cgtcccctct agagtgatcc acatccggaa gctccccatc gacgtcacgg agggggaagt
241 catctccctg gggctgccct ttgggaaggt caccaacctc ctgatgctga aggggaaaaa
301 ccaggccttc atcgagatga acacggagga ggctgccaac accatggtga actactacac
361 ctcggtgacc cctgtgctgc gcggccagcc catctacatc cagttctcca accacaagga
421 gctgaagacc gacagctctc ccaaccaggc gcgggcccag gcggccctgc aggcggtgaa
481 ctcggtccag tcggggaacc tggccttggc tgcctcggcg gcggccgtgg acgcagggat
541 ggcgatggcc gggcagagcc ccgtgctcag gatcatcgtg gagaacctct tctaccctgt
601 gaccctggat gtgctgcacc agattttctc caagttcggc acagtgttga agatcatcac
661 cttcaccaag aacaaccagt tccaggccct gctgcagtat gcggaccccg tgagcgccca
721 gcacgccaag ctgtcgctgg acgggcagaa catctacaac gcctgctgca cgctgcgcat
781 cgacttttcc aagctcacca gcctcaacgt caagtacaac aatgacaaga gccgtgacta
841 cacacgccca gacctgcctt ccggggacag ccagccctcg ctggaccaga ccatggccgc
901 ggccttcggc ctttccgttc cgaacgtcca cggcgccctg gcccccctgg ccatcccctc
961 ggcggcggcg gcagctgcgg cggcaggtcg gatcgccatc ccgggcctgg cgggggcagg
1021 aaattctgta ttgctggtca gcaacctcaa cccagagaga gtcacacccc aaagcctctt
1081 tattcttttc ggcgtctacg gtgacgtgca gcgcgtgaag atcctgttca ataagaagga
1141 gaacgcccta gtgcagatgg cggacggcaa ccaggcccag ctggccatga gccacctgaa
1201 cgggcacaag ctgcacggga agcccatccg catcacgctc tcgaagcacc agaacgtgca
1261 gctgccccgc gagggccagg aggaccaggg cctgaccaag gactacggca actcacccct
1321 gcaccgcttc aagaagccgg gctccaagaa cttccagaac atattcccgc cctcggccac
1381 gctgcacctc tccaacatcc cgccctcagt ctccgaggag gatctcaagg tcctgttttc
1441 cagcaatggg ggcgtcgtca aaggattcaa gttcttccag aaggaccgca agatggcact
1501 gatccagatg ggctccgtgg aggaggcggt ccaggccctc attgacctgc acaaccacga
1561 cctcggggag aaccaccacc tgcgggtctc cttctccaag tccaccatct aggggcacag
1621 gcccccacgg ccgggccccc tggcgacaac ttccatcatt ccagagaaaa gccactttaa
1681 aaacagctga agtgacctag cagaccagag attttatttt tttaaagaga aatcagttta
1741 cctgttttta aaaaaattaa atctagttca ccttgctcac cctgcggtga cagggacagc
1801 tcaggctctt ggtgactgtg gcagcgggag ttcccggccc tccacacccg gggccagacc
1861 ctcggggcca tgccttggtg gggcctgtgt cgggcgtggg gcctgcaggt gggcgccccg
1921 accacgactt ggcttccttg tgccttaaaa aacctgcctt cctgcagcca cacacccacc
1981 cggggtgtcc tggggaccca aggggtgggg gggtcacacc agagagaggc agggggcctg
2041 gccggctcct gcaggatcat gcagctgggg cgcggcggcc gcggctgcga caccccaacc
2101 ccagccctct aatcaagtca cgtgattctc ccttcacccc gcccccaggg ccttcccttc
2161 tgcccccagg cgggctcccc gctgctccag ctgcggagct ggtcgacata atctctgtat
2221 tatatacttt gcagttgcag acgtctgtgc ctagcaatat ttccagttga ccaaatattc
2281 taatcttttt tcatttatat gcaaaagaaa tagttttaag taacttttta tagcaagatg
2341 atacaatggt atgagtgtaa tctaaacttc cttgtggtat taccttgtat gctgttactt
2401 ttattttatt ccttgtaatt aagtcacagg caggacccag tttccagaga gcaggcgggg
2461 ccgcccagtg ggtcaggcac agggagcccc ggtcctatct tagagcccct gagcttcagg
2521 gaaggggcgg gcgtgtcgcc gcctctggca tcgcctccgg ttgccttaca ccacgccttc
2581 acctgcagtc gcctagaaaa cttgctctca aacttcaggg ttttttcttc cttcaaattt
2641 tggaccaaag tctcatttct gtgttttgcc tgcctctgat gctgggaccc ggaaggcggg
2701 cgctcctcct gtcttctctg tgctctttct accgcccccg cgtcctgtcc cgggggctct
2761 cctaggatcc cctttccgta aaagcgtgta acaagggtgt aaatatttat aattttttat
2821 acctgttgtg agacccgagg ggcggcggcg cggtttttta tggtgacaca aatgtatatt
2881 ttgctaacag caattccagg ctcagtattg tgaccgcgga gccacagggg accccacgca
2941 cattccgttg ccttacccga tggcttgtga cgcggagaga accgattaaa accgtttgag
3001 aaactccaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaac
//